Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

11 rows where conformation = "cWW", group_code = "M" and strength = "No Support" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, GU, GG, sequences, predominant_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

tertiary_type 2

molecule 2

strength 1

  • No Support · 11 ✖

group_code 1

conformation 1

  • cWW · 11 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 18 521 528 G:C cWW 3°: pseudoknot No Support M 99.6       0.1                 0.1     0.1 831 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.96 0.0 0.72
23S 25.1 566 575 U:A cWW   No Support M     95.8                           4.2 262 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.67 1.67 0.0 0.8
16S 28 924 1392 C:G cWW   No Support M 0.2 98.3     0.1 0.2       0.1       1.0       899 CG GC,CG 9 4 3 0.46 0.13 0.0 0.13 0.99 0.99 1.9 1.95 0.0 0.78
16S 31 963 972 G:C cWW   No Support M 99.9       0.1                         1153 GC   0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.99 0.0 0.99
16S 34 1061 1195 G:C cWW 3°: base pair No Support M 63.7     35.5 0.3     0.2           0.1 0.1   0.2 1151 GC,AU GC,AU 5 5 1 0.2 0.98 0.99 1.98 0.99 1.0 1.03 1.04 0.0 0.99
23S 49.1 1310 1604 G:C cWW   No Support M 16.4           0.4           0.7       82.6 275 GC GC,AA 10 2 0 0.0 0.33 0.96 1.29 0.94 0.94 -0.34 -0.42 0.56 0.15
23S 74 2064 2446 C:G cWW   No Support M   98.4 1.6                             309 CG CG,UA 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.84 1.88 0.0 0.99
23S 74 2074 2435 U:A cWW   No Support M     99.7       0.3                     309 UA   1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 2.0 0.0 0.99
23S 90 2508 2580 G:U cWW   No Support M         96.6                     3.4   263 GU,UU   1 0 0 0.0 0.0 0.0 0.0 0.0 0.97 1.81 2.0 0.0 0.84
23S 93 2591 2603 C:G cWW   No Support M   99.2       0.4               0.4       262 CG   2 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.93 2.0 0.0 0.84
23S 101 2845 2871 U:U cWW 3°: base pair No Support M 4.4   20.0 26.7 11.1 2.2       2.2       8.9   6.7 17.8 45 GC,UA,AU,GU,UG,CA,GG,UU UA,AU,GG 9 8 3 0.35 0.52 0.68 1.2 0.62 0.78 -0.43 -0.35 0.0 0.12

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;