Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

11 rows where conformation = "cWW", group_code = "E" and strength = "No Support" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, CC, gap, predominant_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

tertiary_type 2

molecule 2

strength 1

  • No Support · 11 ✖

group_code 1

conformation 1

  • cWW · 11 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 18 521 528 G:C cWW 3°: pseudoknot No Support E 99.8             0.1                 0.1 1001 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.99 1.99 0.0 0.95
23S 25.1 566 575 U:A cWW   No Support E     99.5     0.5                       207 UA   0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.96 0.0 0.79
16S 28 924 1392 C:G cWW   No Support E   99.5             0.1 0.1 0.1           0.2 973 CG   1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.96 0.0 0.92
16S 31 963 972 G:C cWW   No Support E 99.5             0.2     0.1           0.2 1006 GC   2 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.94 2.0 0.0 0.95
16S 34 1061 1195 G:C cWW 3°: base pair No Support E 99.3       0.2           0.2     0.1     0.2 998 GC   0 3 0 0.0 0.0 0.0 0.0 0.99 1.0 1.97 1.96 0.0 0.94
23S 49.1 1310 1604 G:C cWW   No Support E 98.8             0.6                 0.6 161 GC   0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.89 1.93 0.0 0.61
23S 74 2064 2446 C:G cWW   No Support E   100.0                               143 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.54
23S 74 2074 2435 U:A cWW   No Support E     100.0                             155 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.59
23S 90 2508 2580 G:U cWW   No Support E         100.0                         135 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.51
23S 93 2591 2603 C:G cWW   No Support E   98.6                             1.4 139 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.92 1.92 0.0 0.52
23S 101 2845 2871 U:U cWW 3°: base pair No Support E 22.7 3.4   52.3 3.4 11.4       1.1   1.1   1.1   2.3 1.1 88 GC,CG,AU,GU,UG,UU GC,AU,UG,CA 6 7 3 0.46 0.76 0.89 1.64 0.79 0.94 0.32 0.58 0.01 0.33

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;