Base-pair statistics (frequencies and scores together) (view)
- predominant_types
- Base-pair types shown in bold in the published table (most frequent).
- covarying_types
- Base-pair types marked * in the published table (involved in a covariation).
- sequences
- Number of sequences in the group.
8 rows where conformation = "cWW", group_code = "C" and strength = "Significant" sorted by position_1
This data as json, CSV (advanced)
Suggested facets: reference_base_pair, GU, AC, GA, UC, UU, sequences, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WCGU, DfDel, PNuc
tertiary_type 2
strength 1
- Significant · 8 ✖
molecule 1
- 23S 8
group_code 1
- C · 8 ✖
conformation 1
- cWW · 8 ✖
| molecule | helix_number | position_1 ▼ | position_2 | reference_base_pair | conformation | tertiary_type | strength | group_code | GC | CG | UA | AU | GU | UG | AA | AC | AG | CA | CC | CU | GA | GG | UC | UU | gap | sequences | predominant_types | covarying_types | Xch | Ych | PE | PES | Cov1 | Cov3 | C1_C3 | WC | WCGU | XCons | YCons | DfDel | PNuc |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23S | 6.1 | 64 | 90 | A:U | cWW | 3°: pseudoknot | Significant | C | 5.2 | 54.2 | 34.4 | 1.0 | 1.0 | 1.0 | 3.1 | 96 | AU,AA,AC | AA,GG,UU | 2 | 8 | 1 | 0.2 | 0.05 | 0.0 | 0.05 | 0.05 | 0.05 | 1.57 | 0.66 | 0.03 | 0.9 | ||||||||||
| 23S | 13 | 239 | 258 | C:G | cWW | Significant | C | 29.0 | 8.0 | 5.0 | 17.0 | 5.0 | 3.0 | 4.0 | 1.0 | 12.0 | 16.0 | 100 | GC,UA,AU,GU,UG,AA,CA,UC,UU | GC,CA,UU | 11 | 19 | 6 | 0.4 | 0.28 | 0.49 | 0.77 | 0.42 | 0.64 | 0.48 | 0.3 | 0.0 | 0.97 | ||||||||
| 23S | 18 | 287 | 353 | G:C | cWW | Significant | C | 2.0 | 23.0 | 12.0 | 1.0 | 18.0 | 2.0 | 7.0 | 5.0 | 2.0 | 3.0 | 2.0 | 4.0 | 19.0 | 100 | GC,UA,AU,AA,AC,AG,CA,CU,GA,UC,UU | GC,UA,AU | 17 | 16 | 7 | 0.42 | 0.24 | 0.46 | 0.7 | 0.46 | 0.47 | -0.36 | -0.25 | 0.01 | 0.79 | |||||
| 23S | 38 | 874 | 903 | G:C | cWW | Significant | C | 91.0 | 1.0 | 2.0 | 2.0 | 2.0 | 2.0 | 100 | GC,GU,UG,AC,UC | GC,AU,UG | 3 | 3 | 2 | 0.67 | 0.33 | 0.94 | 1.27 | 0.92 | 0.96 | 1.56 | 1.67 | 0.0 | 0.97 | ||||||||||||
| 23S | 42 | 1035 | 1120 | U:G | cWW | Significant | C | 1.0 | 98.0 | 1.0 | 100 | UG | 0 | 2 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.01 | 0.99 | 2.0 | 1.84 | 0.0 | 0.97 | ||||||||||||||||
| 23S | 51 | 1348 | 1598 | C:A | cWW | 3°: base pair | Significant | C | 96.0 | 2.0 | 2.0 | 100 | GC,AU,GU | GC,AU | 2 | 3 | 2 | 0.8 | 0.5 | 0.98 | 1.48 | 0.98 | 1.0 | 1.86 | 1.76 | 0.0 | 0.97 | ||||||||||||||
| 23S | 77 | 2124 | 2174 | G:C | cWW | Significant | C | 99.0 | 1.0 | 101 | GC | 1 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 0.99 | 1.92 | 2.0 | 0.0 | 0.98 | |||||||||||||||||
| 23S | 88 | 2401 | 2415 | U:G | cWW | Significant | C | 2.0 | 93.1 | 3.0 | 1.0 | 1.0 | 101 | UA,UG,CA | UG,CA | 3 | 4 | 2 | 0.57 | 0.43 | 0.96 | 1.39 | 0.02 | 0.95 | 1.73 | 1.6 | 0.0 | 0.98 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
f.predominant_types, f.covarying_types,
s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
on s.molecule = f.molecule and s.position_1 = f.position_1
and s.position_2 = f.position_2 and s.group_code = f.group_code;