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Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

8 rows where conformation = "cWW", group_code = "C" and strength = "Significant" sorted by position_1

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Suggested facets: reference_base_pair, GU, AC, GA, UC, UU, sequences, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WCGU, DfDel, PNuc

tertiary_type 2

  • 3°: base pair 1
  • 3°: pseudoknot 1

strength 1

  • Significant · 8 ✖

molecule 1

  • 23S 8

group_code 1

  • C · 8 ✖

conformation 1

  • cWW · 8 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 6.1 64 90 A:U cWW 3°: pseudoknot Significant C       5.2     54.2 34.4 1.0         1.0   1.0 3.1 96 AU,AA,AC AA,GG,UU 2 8 1 0.2 0.05 0.0 0.05 0.05 0.05 1.57 0.66 0.03 0.9
23S 13 239 258 C:G cWW   Significant C 29.0   8.0 5.0 17.0 5.0 3.0     4.0     1.0   12.0 16.0   100 GC,UA,AU,GU,UG,AA,CA,UC,UU GC,CA,UU 11 19 6 0.4 0.28 0.49 0.77 0.42 0.64 0.48 0.3 0.0 0.97
23S 18 287 353 G:C cWW   Significant C 2.0   23.0 12.0 1.0   18.0 2.0 7.0 5.0   2.0 3.0   2.0 4.0 19.0 100 GC,UA,AU,AA,AC,AG,CA,CU,GA,UC,UU GC,UA,AU 17 16 7 0.42 0.24 0.46 0.7 0.46 0.47 -0.36 -0.25 0.01 0.79
23S 38 874 903 G:C cWW   Significant C 91.0     1.0 2.0 2.0   2.0             2.0     100 GC,GU,UG,AC,UC GC,AU,UG 3 3 2 0.67 0.33 0.94 1.27 0.92 0.96 1.56 1.67 0.0 0.97
23S 42 1035 1120 U:G cWW   Significant C     1.0     98.0                   1.0   100 UG   0 2 0 0.0 0.0 0.0 0.0 0.01 0.99 2.0 1.84 0.0 0.97
23S 51 1348 1598 C:A cWW 3°: base pair Significant C 96.0     2.0 2.0                         100 GC,AU,GU GC,AU 2 3 2 0.8 0.5 0.98 1.48 0.98 1.0 1.86 1.76 0.0 0.97
23S 77 2124 2174 G:C cWW   Significant C 99.0             1.0                   101 GC   1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 2.0 0.0 0.98
23S 88 2401 2415 U:G cWW   Significant C     2.0     93.1       3.0     1.0   1.0     101 UA,UG,CA UG,CA 3 4 2 0.57 0.43 0.96 1.39 0.02 0.95 1.73 1.6 0.0 0.98

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;
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