Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

11 rows where conformation = "cWW", group_code = "C" and strength = "No Support" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, GC, CG, UA, sequences, predominant_types, Xch, Ych, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

tertiary_type 2

molecule 2

strength 1

  • No Support · 11 ✖

group_code 1

conformation 1

  • cWW · 11 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 18 521 528 G:C cWW 3°: pseudoknot No Support C 99.4                   0.6             170 GC   0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.93
23S 25.1 566 575 U:A cWW   No Support C     100.0                             100 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97
16S 28 924 1392 C:G cWW   No Support C   99.4                 0.6             154 CG   0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.95 0.0 0.85
16S 31 963 972 G:C cWW   No Support C 100.0                                 163 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9
16S 34 1061 1195 G:C cWW 3°: base pair No Support C 100.0                                 162 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.94 0.01 0.89
23S 49.1 1310 1604 G:C cWW   No Support C 100.0                                 100 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97
23S 74 2064 2446 C:G cWW   No Support C   100.0                               99 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96
23S 74 2074 2435 U:A cWW   No Support C     100.0                             99 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96
23S 90 2508 2580 G:U cWW   No Support C         100.0                         97 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.94
23S 93 2591 2603 C:G cWW   No Support C   100.0                               55 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.53
23S 101 2845 2871 U:U cWW 3°: base pair No Support C 30.0   4.0 42.0 16.0 2.0   2.0       4.0           50 GC,UA,AU,GU,UG,AC,CU GC,UA,AU 4 3 0 0.0 0.59 0.76 1.35 0.76 0.94 0.53 0.75 0.0 0.48

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;