Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "cWS" and strength = "Strong" sorted by position_1

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Suggested facets: GC, CG, AU, AA, UC, gap, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, DfDel, PNuc

group_code 7

strength 1

  • Strong · 7 ✖

molecule 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 33 996 1045 A:C cWS   Strong T 0.1 0.2 2.3 0.6     0.1 62.4     0.2       0.7 0.5 32.9 6974 UA,AC CG,UA,AC 29 37 15 0.46 0.07 0.0 0.07 0.03 0.03 0.19 0.62 0.0 0.0
16S 33 996 1045 A:C cWS   Strong 3 0.1 0.2 2.8 0.6     0.1 73.5 0.1           0.1 0.6 21.8 5664 UA,AC CG,UA,AC 21 22 13 0.6 0.66 0.98 1.64 0.05 0.05 0.56 0.47 0.03 0.62
16S 33 996 1045 A:C cWS   Strong B 0.1 0.3 3.5 0.8     0.1 94.0 0.1           0.1 0.8   4429 UA,AC CG,UA,AC 21 22 13 0.6 0.66 0.98 1.64 0.05 0.05 1.68 1.61 0.0 0.76
16S 33 996 1045 A:C cWS   Strong A                                 100.0 202     0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0.0 0.0
16S 33 996 1045 A:C cWS   Strong C 0.6     1.2     1.9 91.4             1.9   3.1 162 AC   1 2 0 0.0 0.0 0.0 0.0 0.02 0.02 1.56 1.71 0.02 0.86
16S 33 996 1045 A:C cWS   Strong E                                 100.0 1029     0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0
16S 33 996 1045 A:C cWS   Strong M 0.1   0.4 0.3       3.4     0.9       3.6 0.1 91.2 1153 AC,UC AU,UC 7 13 2 0.2 0.0 0.0 0.0 0.01 0.01 -0.39 1.35 0.0 0.0

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;