Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

19 rows where conformation = "No BP", group_code = "T" and molecule = "23S" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, UA, AU, GU, UG, AA, AC, AG, CA, CC, CU, GA, UC, UU, gap, sequences, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, DfDel, PNuc

strength 5

tertiary_type 2

molecule 1

  • 23S · 19 ✖

group_code 1

conformation 1

  • No BP · 19 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 33 687 775 C:G No BP   Weak T   95.8 0.2 0.9   1.2   0.1 0.3 0.1 0.1 0.3 0.1 0.3     0.3 886 CG CG,UA,AU 11 7 0 0.0 0.29 0.97 1.27 0.97 0.98 1.72 1.8 0.0 0.84
23S 33 688 774 U:G No BP   Significant T     90.9 1.5 0.1 3.6       0.1         3.3 0.3 0.2 886 UA,UG,UC UA,AU 4 14 3 0.33 0.17 0.0 0.17 0.93 0.96 1.84 1.42 0.0 0.85
23S 34 703 729 U:G No BP   Weak T   15.1 0.1 0.1 0.1 71.4 0.2   5.1 0.1   0.1   0.6     7.1 887 CG,UG,AG GU,UG,AA 40 4 1 0.04 0.02 0.0 0.02 0.17 0.93 0.55 1.49 0.01 0.79
23S 55 1420 1578 A:U No BP   Strong T 4.5 10.9 5.9 7.0 0.8 0.2 0.1 0.2 0.6 0.2   0.8       22.3 46.3 860 GC,CG,UA,AU,UU GC,CG,AA,UU 29 38 14 0.42 0.5 0.71 1.2 0.53 0.55 -0.83 -0.73 0.1 0.44
23S 59 1527 1544 G:A No BP 3°: base pair Strong T 1.9 18.8 3.7 1.6 7.7 0.3 1.0   0.2 2.8 0.2 0.1 20.0 0.2 0.1 0.3 40.8 861 CG,UA,GU,CA,GA CG,AU,GA,UC 29 16 12 0.53 0.53 0.69 1.21 0.44 0.58 -0.71 -0.76 0.0 0.49
23S 66 1799 1820 G:U No BP   Weak T 22.1   0.1 0.6 73.2     0.1         0.4       3.5 842 GC,GU UA,GU,AC 3 10 1 0.15 0.01 0.0 0.01 0.24 0.99 1.63 0.93 0.0 0.78
23S 69 1911 1919 U:A No BP   Weak T     97.9             0.5           0.1 1.5 852 UA   2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.86 0.0 0.8
23S 71 1935 1962 G:C No BP   Strong T 51.6 20.5   16.5 5.7 0.2 0.2 2.6 1.1       0.2 0.7 0.2 0.4   847 GC,CG,AU,GU,AC GC,CG,AU 21 23 8 0.36 0.77 0.89 1.65 0.89 0.95 0.55 0.52 0.0 0.81
23S 74 2075 2434 U:A No BP   Weak T   0.1 97.8     0.4 0.2         0.1     0.2 1.2   845 UA CG,UA 4 8 3 0.5 0.05 0.0 0.05 0.98 0.98 1.94 1.83 0.0 0.81
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong T 0.1 0.2 0.9 1.1 0.5   1.3   11.0 0.1     53.0   0.1   31.6 847 AG,GA AG,GA,UC 14 10 9 0.75 0.72 0.94 1.66 0.04 0.04 -0.13 -0.1 0.0 0.55
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong T   26.0 37.7     1.1 0.1     1.8     1.3     0.1 32.0 847 CG,UA CG,UA 15 14 8 0.55 0.86 0.94 1.79 0.94 0.95 -0.3 -0.21 0.0 0.55
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong T 5.4 7.7 0.6 49.2 0.4   0.7   0.5 0.4   0.2 0.8     2.5 31.6 847 GC,CG,AU,UU GC,CG,UA,AU 14 15 9 0.62 0.72 0.92 1.64 0.92 0.93 -0.37 -0.3 0.0 0.55
23S 80 2249 2255 U:G No BP   Weak T     4.1     94.6       0.6       0.4 0.1 0.1 0.1 845 UA,UG UG,CA 2 10 1 0.17 0.11 0.0 0.11 0.04 0.99 1.91 1.68 0.0 0.81
23S 84 2296 2322 U:A No BP   Strong T   0.4 63.4 0.1   0.2 0.1 0.1   0.1 0.1   0.5   2.7 0.5 31.7 848 UA,UC CG,UA,AU 5 11 3 0.38 0.1 0.0 0.1 0.94 0.94 0.34 0.19 0.0 0.55
23S 90 2511 2577 U:A No BP   No Support T     99.1             0.9               778 UA   2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.93 2.0 0.0 0.74
23S 94 2637 2781 U:A No BP   Strong T 0.9 11.6 51.8 1.7   0.8 0.8 0.2 0.3 1.1 0.6 0.2 0.8   0.8 0.5 28.3 662 CG,UA GC,CG,UA,AU 15 23 9 0.47 0.71 0.92 1.63 0.92 0.93 -0.24 -0.19 0.04 0.46
23S 98 2796 2800 U:A No BP   Strong T 1.7 0.6 4.2 0.6   0.4       0.9           0.1 91.4 693 UA GC,CG,UA,AU 7 7 3 0.43 0.67 0.83 1.5 0.83 0.88 -0.39 -0.38 0.0 0.06
23S 99 2808 2891 G:U No BP 3°: base pair ??? T 0.7 1.7 39.9 7.6 9.7 4.3 1.7 0.2 1.4 3.3     2.4 0.5   1.0 25.5 421 UA,AU,GU,UG,CA,GA CG,UA,GU,AC 21 18 3 0.15 0.34 0.69 1.03 0.67 0.86 -0.74 -0.05 0.23 0.3
23S 101 2849 2866 U:U No BP 3°: base pair Strong T     0.7   1.8 3.8   0.4 0.2 0.2   0.9 0.4 26.2 1.1 57.5 6.7 447 UG,GG,UU AC,CA,GG,UU 22 18 8 0.4 0.75 0.9 1.65 0.01 0.07 0.7 0.45 0.02 0.4

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;