Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

12 rows where conformation = "No BP", group_code = "E" and strength = "Strong" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, GU, AC, GA, UU, sequences, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, YCons, DfDel, PNuc

tertiary_type 2

molecule 2

strength 1

  • Strong · 12 ✖

group_code 1

conformation 1

  • No BP · 12 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 20 582 758 C:C No BP 3°: base pair Strong E 0.3   0.9     1.2   0.2             97.4   0.1 1032 UC   2 4 0 0.0 0.0 0.0 0.0 0.01 0.02 1.95 1.82 0.0 0.98
16S 34 1064 1192 G:C No BP   Strong E   0.1 2.2   1.0 1.3     0.3 0.1 0.1 89.3     4.3 1.1 0.2 1000 UA,CU,UC AG,CU,UC 7 8 5 0.67 0.44 0.94 1.38 0.02 0.05 1.45 1.45 0.0 0.95
23S 55 1420 1578 A:U No BP   Strong E 12.8 50.8 24.6 5.0 0.6     0.6   1.1             4.6 179 GC,CG,UA,AU GC,CG,UA,AU 10 12 8 0.73 0.95 0.98 1.93 0.98 0.98 0.11 0.15 0.01 0.65
23S 59 1527 1544 G:A No BP 3°: base pair Strong E 2.8 67.8 4.4 0.6 15.6       0.6         0.6     7.8 180 GC,CG,UA,GU CG,UA,GU 6 6 5 0.83 0.82 0.95 1.77 0.82 0.99 0.46 0.57 0.01 0.63
23S 71 1935 1962 G:C No BP   Strong E   98.7       0.6   0.6                   155 CG CG,AC 2 1 1 0.67 0.5 0.99 1.49 0.99 0.99 1.89 1.94 0.0 0.59
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong E 0.6     4.5 2.6               92.3         155 AU,GU,GA AU,GA 3 3 2 0.67 0.58 0.97 1.55 0.05 0.08 1.74 1.57 0.0 0.59
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong E   4.5 91.6     2.6             0.6     0.6   155 CG,UA,UG CG,UA 2 4 2 0.67 0.54 0.96 1.5 0.96 0.99 1.68 1.57 0.0 0.59
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong E 2.6     91.0 0.6         1.9   1.3 2.6         155 GC,AU,GA GC,AU,CA 4 3 1 0.29 0.29 0.94 1.22 0.94 0.94 1.48 1.56 0.0 0.59
23S 84 2296 2322 U:A No BP   Strong E     85.2         0.6   0.6     2.6   10.3 0.6   155 UA,GA,UC UA,AC 1 2 0 0.0 0.04 0.0 0.04 0.85 0.85 1.72 1.45 0.0 0.59
23S 94 2637 2781 U:A No BP   Strong E 1.6 68.0 12.8 1.6   3.2 0.8 0.8   1.6 3.2   0.8   4.0 1.6   125 CG,UA,UG,CC,UC GC,CG,UA,AU 10 14 7 0.58 0.5 0.84 1.34 0.84 0.87 0.97 0.75 0.0 0.47
23S 98 2796 2800 U:A No BP   Strong E                                 100.0 126     0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
23S 101 2849 2866 U:U No BP 3°: base pair Strong E           1.8       0.9   0.9   0.9 0.9 87.2 7.4 109 UU CA,GG,UU 4 0 0 0.0 0.33 0.96 1.29 0.0 0.02 1.34 1.06 0.03 0.38

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;