crw2: basepair_combined: 12 rows where conformation = "No BP", group_code = "E" and molecule = "16S" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
sequences: Number of sequences in the group.

12 rows where conformation = "No BP", group_code = "E" and molecule = "16S" sorted by position_1

descending

molecule	helix_number	position_1 ▼	position_2	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	sequences	predominant_types	covarying_types	Xch	Ych	PE	PES	Cov1	Cov3	C1_C3	WC	WCGU	XCons	YCons	DfDel	PNuc
16S	1	13	21	U:G	No BP		Weak	E		0.1	0.1			98.9											0.8	815	UG		0	1	0	0.0	0.0	0.0	0.0	0.0	1.0	1.9	1.97	0.01	0.77
16S	15	375	388	U:G	No BP		Weak	E	0.1	0.2	0.1			98.0							0.1	0.2		0.1	1.3	1026	UG	GC,UG	1	1	1	1.0	0.12	0.0	0.12	0.0	1.0	1.93	1.84	0.01	0.96
16S	20	582	758	C:C	No BP	3°: base pair	Strong	E	0.3		0.9			1.2		0.2							97.4		0.1	1032	UC		2	4	0	0.0	0.0	0.0	0.0	0.01	0.02	1.95	1.82	0.0	0.98
16S	21	606	632	G:U	No BP		Weak	E																	100.0	1042			0	0	0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
16S	30	944	1237	G:C	No BP		No Support	E	99.2												0.1			0.1	0.6	972	GC	GC,UU	0	0	0	0.0	0.5	1.0	1.5	1.0	1.0	1.92	1.98	0.01	0.92
16S	31	960	975	U:A	No BP		Weak	E			0.7			99.0			0.1					0.2				1006	UG		0	4	0	0.0	0.0	0.0	0.0	0.01	1.0	1.97	1.94	0.0	0.95
16S	31	961	974	U:A	No BP		Weak	E		0.1	2.4			96.7					0.4			0.1	0.3			1007	UA,UG	UG,CC	0	7	0	0.0	0.12	0.0	0.12	0.03	0.99	1.94	1.78	0.0	0.95
16S	34	1053	1205	G:U	No BP		Weak	E					99.8												0.2	997	GU		0	0	0	0.0	0.0	0.0	0.0	0.0	1.0	1.99	1.98	0.0	0.94
16S	34	1064	1192	G:C	No BP		Strong	E		0.1	2.2		1.0	1.3			0.3	0.1	0.1	89.3			4.3	1.1	0.2	1000	UA,CU,UC	AG,CU,UC	7	8	5	0.67	0.44	0.94	1.38	0.02	0.05	1.45	1.45	0.0	0.95
16S	40	1158	1178	C:G	No BP		Weak	E		80.9	0.1			2.7		0.1	0.1	0.8	12.7	0.7		0.2	1.2	0.1	0.5	1019	CG,UG,CC	CG,UC	5	8	1	0.15	0.06	0.0	0.06	0.81	0.84	1.71	1.23	0.01	0.96
16S	40	1159	1177	U:G	No BP		Weak	E	0.1	1.6	0.7	0.4		65.6	10.1	2.2	8.0	2.3	0.2	0.2	0.4	5.1	0.3	2.3	0.7	1018	UG,AA,AC,AG,CA,GG,UU	UG,AA,CC	15	13	4	0.29	0.31	0.77	1.07	0.03	0.69	0.72	1.0	0.01	0.96
16S	45	1506	1529	U:G	No BP		Weak	E		2.0	0.4			95.8			0.1						0.1		1.4	684	CG,UG		3	2	0	0.0	0.0	0.0	0.0	0.03	1.0	1.83	1.8	0.01	0.64

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JSON shape: default, array, newline-delimited

CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;

Base-pair statistics (frequencies and scores together) (view)

12 rows where conformation = "No BP", group_code = "E" and molecule = "16S" sorted by position_1

Advanced export