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Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

15 rows where conformation = "No BP", group_code = "B" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, UA, AG, CC, gap, sequences, predominant_types, Xch, Ych, PE, PES, Cov1, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

molecule 2

  • 16S 9
  • 23S 6

strength 1

  • Weak · 15 ✖

group_code 1

  • B · 15 ✖

conformation 1

  • No BP · 15 ✖

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 1 13 21 U:G No BP   Weak B     0.2     98.9     0.2         0.1   0.1 0.1 2128 UG   4 6 1 0.2 0.05 0.0 0.05 0.0 0.99 1.94 1.89 0.0 0.36
16S 15 375 388 U:G No BP   Weak B     0.3     98.8     0.1           0.2 0.5   4613 UG   2 17 0 0.0 0.0 0.0 0.0 0.0 0.99 1.97 1.89 0.0 0.79
16S 21 606 632 G:U No BP   Weak B 2.2 1.0 1.0 2.3 69.1 1.9 0.4 0.1 0.5   0.5 0.4 2.9 12.1 1.8 2.0 1.7 4794 GC,AU,GU,GA,GG,UU GU,UG,AA,CC 64 114 12 0.14 0.1 0.0 0.1 0.07 0.79 1.25 0.72 0.01 0.8
23S 33 687 775 C:G No BP   Weak B   99.3               0.4 0.4             282 CG   0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.93 0.0 0.86
23S 34 703 729 U:G No BP   Weak B   1.8       98.2                       282 UG   1 0 0 0.0 0.0 0.0 0.0 0.02 1.0 1.87 2.0 0.0 0.86
16S 31 960 975 U:A No BP   Weak B     92.1     7.5                     0.2 4347 UA,UG   1 10 0 0.0 0.0 0.0 0.0 0.92 1.0 1.97 1.59 0.0 0.74
16S 31 961 974 U:A No BP   Weak B 0.1   86.4     0.3         0.1       11.3 1.2 0.4 4330 UA,UC GC,UA 1 28 0 0.0 0.01 0.0 0.01 0.87 0.87 1.95 1.32 0.0 0.74
16S 34 1053 1205 G:U No BP   Weak B 3.8       95.6             0.2         0.2 4383 GC,GU   2 12 0 0.0 0.01 0.0 0.01 0.04 1.0 1.95 1.75 0.0 0.75
16S 40 1158 1178 C:G No BP   Weak B   99.8                               4605 CG   1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.99 0.0 0.79
16S 40 1159 1177 U:G No BP   Weak B   5.7 0.1     93.5     0.5               0.1 4600 CG,UG   43 2 1 0.04 0.0 0.0 0.0 0.06 0.99 1.63 1.97 0.0 0.78
16S 45 1506 1529 U:G No BP   Weak B     0.3     98.1         0.1     0.4 0.7 0.3 0.1 718 UG UG,CC 3 5 0 0.0 0.08 0.0 0.08 0.0 0.98 1.92 1.86 0.0 0.12
23S 66 1799 1820 G:U No BP   Weak B         100.0                         262 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.8
23S 69 1911 1919 U:A No BP   Weak B     98.0             1.6             0.4 244 UA   2 0 0 0.0 0.0 0.0 0.0 0.98 0.98 1.83 1.95 0.0 0.74
23S 74 2075 2434 U:A No BP   Weak B     100.0                             241 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74
23S 80 2249 2255 U:G No BP   Weak B           99.6                     0.4 238 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.95 0.0 0.73

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;
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