Base-pair statistics (frequencies and scores together) (view)
- predominant_types
- Base-pair types shown in bold in the published table (most frequent).
- covarying_types
- Base-pair types marked * in the published table (involved in a covariation).
- sequences
- Number of sequences in the group.
15 rows where conformation = "No BP", group_code = "B" and strength = "Weak" sorted by position_1
This data as json, CSV (advanced)
Suggested facets: helix_number, reference_base_pair, UA, AG, CC, gap, sequences, predominant_types, Xch, Ych, PE, PES, Cov1, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc
| molecule | helix_number | position_1 ▼ | position_2 | reference_base_pair | conformation | tertiary_type | strength | group_code | GC | CG | UA | AU | GU | UG | AA | AC | AG | CA | CC | CU | GA | GG | UC | UU | gap | sequences | predominant_types | covarying_types | Xch | Ych | PE | PES | Cov1 | Cov3 | C1_C3 | WC | WCGU | XCons | YCons | DfDel | PNuc |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16S | 1 | 13 | 21 | U:G | No BP | Weak | B | 0.2 | 98.9 | 0.2 | 0.1 | 0.1 | 0.1 | 2128 | UG | 4 | 6 | 1 | 0.2 | 0.05 | 0.0 | 0.05 | 0.0 | 0.99 | 1.94 | 1.89 | 0.0 | 0.36 | |||||||||||||
| 16S | 15 | 375 | 388 | U:G | No BP | Weak | B | 0.3 | 98.8 | 0.1 | 0.2 | 0.5 | 4613 | UG | 2 | 17 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 1.97 | 1.89 | 0.0 | 0.79 | ||||||||||||||
| 16S | 21 | 606 | 632 | G:U | No BP | Weak | B | 2.2 | 1.0 | 1.0 | 2.3 | 69.1 | 1.9 | 0.4 | 0.1 | 0.5 | 0.5 | 0.4 | 2.9 | 12.1 | 1.8 | 2.0 | 1.7 | 4794 | GC,AU,GU,GA,GG,UU | GU,UG,AA,CC | 64 | 114 | 12 | 0.14 | 0.1 | 0.0 | 0.1 | 0.07 | 0.79 | 1.25 | 0.72 | 0.01 | 0.8 | ||
| 23S | 33 | 687 | 775 | C:G | No BP | Weak | B | 99.3 | 0.4 | 0.4 | 282 | CG | 0 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 0.99 | 2.0 | 1.93 | 0.0 | 0.86 | ||||||||||||||||
| 23S | 34 | 703 | 729 | U:G | No BP | Weak | B | 1.8 | 98.2 | 282 | UG | 1 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.02 | 1.0 | 1.87 | 2.0 | 0.0 | 0.86 | |||||||||||||||||
| 16S | 31 | 960 | 975 | U:A | No BP | Weak | B | 92.1 | 7.5 | 0.2 | 4347 | UA,UG | 1 | 10 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.92 | 1.0 | 1.97 | 1.59 | 0.0 | 0.74 | ||||||||||||||||
| 16S | 31 | 961 | 974 | U:A | No BP | Weak | B | 0.1 | 86.4 | 0.3 | 0.1 | 11.3 | 1.2 | 0.4 | 4330 | UA,UC | GC,UA | 1 | 28 | 0 | 0.0 | 0.01 | 0.0 | 0.01 | 0.87 | 0.87 | 1.95 | 1.32 | 0.0 | 0.74 | |||||||||||
| 16S | 34 | 1053 | 1205 | G:U | No BP | Weak | B | 3.8 | 95.6 | 0.2 | 0.2 | 4383 | GC,GU | 2 | 12 | 0 | 0.0 | 0.01 | 0.0 | 0.01 | 0.04 | 1.0 | 1.95 | 1.75 | 0.0 | 0.75 | |||||||||||||||
| 16S | 40 | 1158 | 1178 | C:G | No BP | Weak | B | 99.8 | 4605 | CG | 1 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 1.98 | 1.99 | 0.0 | 0.79 | ||||||||||||||||||
| 16S | 40 | 1159 | 1177 | U:G | No BP | Weak | B | 5.7 | 0.1 | 93.5 | 0.5 | 0.1 | 4600 | CG,UG | 43 | 2 | 1 | 0.04 | 0.0 | 0.0 | 0.0 | 0.06 | 0.99 | 1.63 | 1.97 | 0.0 | 0.78 | ||||||||||||||
| 16S | 45 | 1506 | 1529 | U:G | No BP | Weak | B | 0.3 | 98.1 | 0.1 | 0.4 | 0.7 | 0.3 | 0.1 | 718 | UG | UG,CC | 3 | 5 | 0 | 0.0 | 0.08 | 0.0 | 0.08 | 0.0 | 0.98 | 1.92 | 1.86 | 0.0 | 0.12 | |||||||||||
| 23S | 66 | 1799 | 1820 | G:U | No BP | Weak | B | 100.0 | 262 | GU | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 2.0 | 2.0 | 0.0 | 0.8 | ||||||||||||||||||
| 23S | 69 | 1911 | 1919 | U:A | No BP | Weak | B | 98.0 | 1.6 | 0.4 | 244 | UA | 2 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.98 | 0.98 | 1.83 | 1.95 | 0.0 | 0.74 | ||||||||||||||||
| 23S | 74 | 2075 | 2434 | U:A | No BP | Weak | B | 100.0 | 241 | UA | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 2.0 | 2.0 | 0.0 | 0.74 | ||||||||||||||||||
| 23S | 80 | 2249 | 2255 | U:G | No BP | Weak | B | 99.6 | 0.4 | 238 | UG | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 2.0 | 1.95 | 0.0 | 0.73 |
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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
f.predominant_types, f.covarying_types,
s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
on s.molecule = f.molecule and s.position_1 = f.position_1
and s.position_2 = f.position_2 and s.group_code = f.group_code;