Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

12 rows where conformation = "No BP", group_code = "B" and strength = "Strong" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, UG, UU, sequences, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, DfDel, PNuc

tertiary_type 2

molecule 2

strength 1

  • Strong · 12 ✖

group_code 1

conformation 1

  • No BP · 12 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 20 582 758 C:C No BP 3°: base pair Strong B 0.1 11.2 2.6     68.4   0.1   0.2 15.6 0.8     0.6 0.3   4697 CG,UA,UG,CC UG,CC 54 47 17 0.34 0.5 0.84 1.34 0.14 0.82 1.11 1.08 0.0 0.8
16S 34 1064 1192 G:C No BP   Strong B 97.1       2.1     0.1         0.1 0.6       4404 GC,GU   2 24 1 0.08 0.0 0.0 0.0 0.97 0.99 1.99 1.78 0.0 0.75
23S 55 1420 1578 A:U No BP   Strong B       11.4 0.4 0.8     1.5     2.3       72.3 11.5 264 AU,CU,UU AG,UU 13 7 0 0.0 0.09 0.0 0.09 0.13 0.14 0.55 1.05 0.03 0.72
23S 59 1527 1544 G:A No BP 3°: base pair Strong B 3.4 13.6 5.7 0.4 2.7   1.5           62.1     0.8 9.9 264 GC,CG,UA,GU,GA CG,GA,UU 9 3 1 0.17 0.51 0.85 1.36 0.26 0.29 0.36 0.4 0.0 0.73
23S 71 1935 1962 G:C No BP   Strong B 99.6         0.4                       240 GC GC,UG 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.96 1.91 0.0 0.74
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong B                 34.4       65.6         241 AG,GA AG,GA 2 2 2 1.0 1.0 1.0 2.0 0.0 0.0 1.07 1.07 0.0 0.74
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong B   41.9 53.9             1.7     2.5         241 CG,UA,GA CG,UA 7 5 5 0.83 0.91 0.96 1.87 0.96 0.96 0.86 1.02 0.0 0.74
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong B       100.0                           241 AU   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74
23S 84 2296 2322 U:A No BP   Strong B     96.7                       2.5 0.8   241 UA,UC   0 3 0 0.0 0.0 0.0 0.0 0.97 0.97 1.95 1.76 0.0 0.74
23S 94 2637 2781 U:A No BP   Strong B     99.5     0.5                       213 UA   0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.96 0.0 0.65
23S 98 2796 2800 U:A No BP   Strong B   1.4 12.4 0.9   0.5       2.8           0.5 81.7 218 UA,CA CG,UA,AU 5 5 1 0.2 0.39 0.8 1.19 0.8 0.82 -0.52 -0.47 0.01 0.12
23S 101 2849 2866 U:U No BP 3°: base pair Strong B         3.4 1.5     0.5     1.0 1.0 51.7   41.0   205 GU,GG,UU GG,UU 12 11 7 0.61 0.85 0.93 1.77 0.0 0.05 0.9 0.89 0.0 0.63

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;