Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

15 rows where conformation = "No BP", group_code = "A" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, UA, UG, sequences, predominant_types, Xch, Ych, Cov1, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

molecule 2

strength 1

  • Weak · 15 ✖

group_code 1

conformation 1

  • No BP · 15 ✖

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 1 13 21 U:G No BP   Weak A           100.0                       154 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.58
16S 15 375 388 U:G No BP   Weak A     2.2     95.6                     2.2 228 UA,UG   0 3 0 0.0 0.0 0.0 0.0 0.02 1.0 1.81 1.85 0.02 0.84
16S 21 606 632 G:U No BP   Weak A 5.2     2.2 47.0 4.3           0.4 0.9 3.9 4.3 31.0 0.9 232 GC,AU,GU,UG,GG,UC,UU GU,UC 3 14 0 0.0 0.08 0.0 0.08 0.07 0.59 0.86 1.0 0.01 0.87
23S 33 687 775 C:G No BP   Weak A   100.0                               37 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9
23S 34 703 729 U:G No BP   Weak A   32.4       67.6                       37 CG,UG   3 0 0 0.0 0.0 0.0 0.0 0.32 1.0 1.09 2.0 0.0 0.9
16S 31 960 975 U:A No BP   Weak A           100.0                       208 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.79
16S 31 961 974 U:A No BP   Weak A   3.3 3.3     78.5                   14.8   209 CG,UA,UG,UU   3 2 0 0.0 0.0 0.0 0.0 0.07 0.85 1.79 1.22 0.0 0.79
16S 34 1053 1205 G:U No BP   Weak A 1.0     0.5 98.5                         197 GU   0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.92 0.0 0.75
16S 40 1158 1178 C:G No BP   Weak A   99.5       0.5                       195 CG   1 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.95 2.0 0.0 0.74
16S 40 1159 1177 U:G No BP   Weak A   53.0       46.0           0.5       0.5   198 CG,UG CG,UU 7 1 0 0.0 0.01 0.0 0.01 0.53 0.99 1.0 1.92 0.0 0.75
16S 45 1506 1529 U:G No BP   Weak A           95.0                 5.0     80 UG,UC   0 1 0 0.0 0.0 0.0 0.0 0.0 0.95 2.0 1.71 0.0 0.3
23S 66 1799 1820 G:U No BP   Weak A 90.2       9.8                         41 GC,GU   0 2 0 0.0 0.0 0.0 0.0 0.9 1.0 2.0 1.54 0.0 1.0
23S 69 1911 1919 U:A No BP   Weak A     100.0                             41 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 74 2075 2434 U:A No BP   Weak A     100.0                             41 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 80 2249 2255 U:G No BP   Weak A           100.0                       41 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;