Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

19 rows where conformation = "No BP", group_code = 3 and molecule = "23S" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, AA, AC, CA, GA, UC, UU, gap, sequences, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

strength 5

tertiary_type 2

molecule 1

  • 23S · 19 ✖

group_code 1

conformation 1

  • No BP · 19 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 33 687 775 C:G No BP   Weak 3   99.0               0.2 0.2     0.4     0.2 524 CG   2 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 1.94 0.0 0.83
23S 33 688 774 U:G No BP   Significant 3     89.5     5.3                 5.0 0.2   524 UA,UG,UC   0 7 0 0.0 0.0 0.0 0.0 0.9 0.95 2.0 1.4 0.0 0.83
23S 34 703 729 U:G No BP   Weak 3   22.5       77.3       0.2               524 CG,UG UG,CA 20 0 0 0.0 0.01 0.0 0.01 0.23 1.0 1.23 1.98 0.0 0.83
23S 55 1420 1578 A:U No BP   Strong 3 8.1 18.8 9.1 10.5 1.0 0.4   0.2 0.8 0.4   1.2       39.5 9.8 484 GC,CG,UA,AU,UU GC,CG,UU 26 22 11 0.46 0.53 0.74 1.27 0.52 0.53 -0.18 -0.05 0.02 0.69
23S 59 1527 1544 G:A No BP 3°: base pair Strong 3 2.9 32.6 4.7 0.4 13.4   0.8   0.2       33.8 0.2   0.4 10.4 485 GC,CG,UA,GU,GA CG,AU,GA 15 10 6 0.48 0.59 0.75 1.34 0.45 0.6 0.12 -0.1 0.0 0.69
23S 66 1799 1820 G:U No BP   Weak 3 40.0       58.3     0.2                 1.5 458 GC,GU GU,AC 0 4 0 0.0 0.01 0.0 0.01 0.41 1.0 1.83 0.9 0.0 0.72
23S 69 1911 1919 U:A No BP   Weak 3     98.6             0.9           0.2 0.2 440 UA   2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.9 1.98 0.0 0.7
23S 71 1935 1962 G:C No BP   Strong 3 56.9 39.9     2.5 0.5   0.2                   436 GC,CG,GU GC,CG 4 3 2 0.57 0.93 0.97 1.89 0.97 1.0 0.97 0.88 0.0 0.69
23S 74 2075 2434 U:A No BP   Weak 3     99.3                         0.7   437 UA   0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.69
23S 76.1 2112 2169 G:A No BP 3°: pseudoknot Strong 3 0.2     2.1 0.9       20.1       76.7         437 AU,AG,GA AG,GA 8 8 7 0.88 0.86 0.97 1.83 0.02 0.03 1.24 1.07 0.0 0.69
23S 76.1 2113 2170 U:A No BP 3°: pseudoknot Strong 3   27.5 66.8     0.9       2.5     2.1     0.2   437 CG,UA,CA,GA CG,UA 11 10 7 0.67 0.83 0.94 1.77 0.94 0.95 0.98 1.11 0.0 0.69
23S 76.1 2117 2172 A:U No BP 3°: pseudoknot Strong 3 8.9     88.8 0.2         0.7   0.5 0.9         437 GC,AU GC,AU,CA 5 4 2 0.44 0.86 0.98 1.84 0.98 0.98 1.44 1.45 0.0 0.69
23S 80 2249 2255 U:G No BP   Weak 3           99.1               0.7     0.2 434 UG   1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.94 1.97 0.0 0.69
23S 84 2296 2322 U:A No BP   Strong 3     92.9         0.2   0.2     0.9   5.0 0.7   437 UA,UC UA,AC 1 5 0 0.0 0.03 0.0 0.03 0.93 0.93 1.88 1.64 0.0 0.69
23S 90 2511 2577 U:A No BP   No Support 3     100.0                             417 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.66
23S 94 2637 2781 U:A No BP   Strong 3 1.1 20.3 71.0 0.8   1.1 0.3 0.3   1.8 1.1 0.3 0.3   1.3 0.5   379 CG,UA GC,CG,UA,AU 10 15 7 0.56 0.76 0.93 1.7 0.93 0.94 1.02 0.92 0.0 0.6
23S 98 2796 2800 U:A No BP   Strong 3 3.1 1.0 7.0 1.0   0.8       1.6           0.3 85.2 384 GC,UA GC,CG,UA,AU 7 7 3 0.43 0.67 0.82 1.49 0.82 0.88 -0.56 -0.55 0.0 0.09
23S 99 2808 2891 G:U No BP 3°: base pair ??? 3 0.9 2.2 39.7 7.4 12.6 4.9 0.3   1.2 4.3     3.1     0.6 22.7 325 CG,UA,AU,GU,UG,CA,GA CG,UA,GU 17 9 2 0.15 0.39 0.7 1.1 0.65 0.88 -0.42 0.05 0.08 0.4
23S 101 2849 2866 U:U No BP 3°: base pair Strong 3     0.3   2.0 2.6     0.3 0.3   0.9 0.6 30.4 0.3 59.4 3.2 352 GU,UG,GG,UU CA,GG,UU 16 12 7 0.5 0.82 0.93 1.75 0.0 0.05 0.82 0.7 0.02 0.54

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;