Base-pair collective (covariation) scores

35 rows where molecule = "16S" and strength = "No Support" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc

group_code 7

conformation 2

strength 1

  • No Support · 35 ✖

molecule 1

  • 16S · 35 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
1212 1212 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support T 3 5 0 0.0 0.04 0.0 0.04 1.0 1.0 1.96 1.96 0.0 0.77 6570
1213 1213 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support 3 3 4 0 0.0 0.05 0.0 0.05 1.0 1.0 1.97 1.96 0.0 0.78 5577
1214 1214 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support B 3 3 0 0.0 0.06 0.0 0.06 1.0 1.0 1.96 1.95 0.0 0.74 4373
1215 1215 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support A 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.96 0.0 0.77 203
1216 1216 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support C 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.93 170
1217 1217 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.99 1.99 0.0 0.95 1001
1218 1218 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support M 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.96 0.0 0.72 831
2017 2017 16S 28 924 1392   v4 C:G cWW       No Support T 14 9 3 0.26 0.07 0.0 0.07 0.99 1.0 1.94 1.96 0.0 0.7 5980
2018 2018 16S 28 924 1392   v4 C:G cWW       No Support 3 5 3 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.69 4928
2019 2019 16S 28 924 1392   v4 C:G cWW       No Support B 4 3 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.65 3785
2020 2020 16S 28 924 1392   v4 C:G cWW       No Support A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 2.0 0.0 0.64 169
2021 2021 16S 28 924 1392   v4 C:G cWW       No Support C 0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.95 0.0 0.85 154
2022 2022 16S 28 924 1392   v4 C:G cWW       No Support E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.96 0.0 0.92 973
2023 2023 16S 28 924 1392   v4 C:G cWW       No Support M 9 4 3 0.46 0.13 0.0 0.13 0.99 0.99 1.9 1.95 0.0 0.78 899
2129 2129 16S 30 944 1237   v4 G:C No BP       No Support T 3 4 0 0.0 0.04 0.0 0.04 1.0 1.0 1.95 1.97 0.0 0.78 6633
2130 2130 16S 30 944 1237   v4 G:C No BP       No Support 3 2 1 0 0.0 0.11 0.0 0.11 1.0 1.0 1.96 1.99 0.0 0.74 5326
2131 2131 16S 30 944 1237   v4 G:C No BP       No Support B 2 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.99 0.0 0.71 4162
2132 2132 16S 30 944 1237   v4 G:C No BP       No Support A 0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 2.0 0.0 0.72 191
2133 2133 16S 30 944 1237   v4 G:C No BP       No Support C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 160
2134 2134 16S 30 944 1237   v4 G:C No BP       No Support E 0 0 0 0.0 0.5 1.0 1.5 1.0 1.0 1.92 1.98 0.01 0.92 972
2135 2135 16S 30 944 1237   v4 G:C No BP       No Support M 1 3 0 0.0 0.0 0.0 0.0 0.99 1.0 1.95 1.9 0.0 0.99 1152
2234 2234 16S 31 963 972   v4 G:C cWW       No Support T 5 4 1 0.22 0.13 0.0 0.13 1.0 1.0 1.96 1.96 0.0 0.8 6866
2235 2235 16S 31 963 972   v4 G:C cWW       No Support 3 5 3 0 0.0 0.14 0.0 0.14 1.0 1.0 1.96 1.97 0.0 0.77 5549
2236 2236 16S 31 963 972   v4 G:C cWW       No Support B 3 3 1 0.33 0.18 0.0 0.18 1.0 1.0 1.96 1.96 0.0 0.74 4342
2237 2237 16S 31 963 972   v4 G:C cWW       No Support A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.76 201
2238 2238 16S 31 963 972   v4 G:C cWW       No Support C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 163
2239 2239 16S 31 963 972   v4 G:C cWW       No Support E 2 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.94 2.0 0.0 0.95 1006
2240 2240 16S 31 963 972   v4 G:C cWW       No Support M 0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.99 0.0 0.99 1153
2500 2500 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support T 7 21 2 0.14 0.74 0.98 1.72 0.98 1.0 1.64 1.56 0.0 0.79 6774
2501 2501 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support 3 2 16 1 0.11 0.1 0.0 0.1 0.97 1.0 1.95 1.79 0.0 0.76 5466
2502 2502 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support B 1 11 0 0.0 0.0 0.0 0.0 0.99 1.0 1.98 1.94 0.0 0.73 4267
2503 2503 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support A 1 2 1 0.67 0.0 0.0 0.0 0.44 1.0 1.62 1.01 0.0 0.74 197
2504 2504 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.94 0.01 0.89 162
2505 2505 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support E 0 3 0 0.0 0.0 0.0 0.0 0.99 1.0 1.97 1.96 0.0 0.94 998
2506 2506 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support M 5 5 1 0.2 0.98 0.99 1.98 0.99 1.0 1.03 1.04 0.0 0.99 1151

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");