Base-pair collective (covariation) scores

1,207 rows where group_code = "T" and strength = "Strong" sorted by position_1

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conformation 11

molecule 2

strength 1

  • Strong · 1,207 ✖

group_code 1

  • T · 1,207 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3347 3347 23S 1 1 2902   v4 G:C cWW       Strong T 22 22 9 0.41 0.64 0.86 1.5 0.86 0.94 -0.54 -0.28 0.11 0.21 327
3354 3354 23S 1 2 2901   v4 G:C cWW       Strong T 25 23 8 0.33 0.76 0.88 1.65 0.88 0.92 -0.7 -0.5 0.08 0.23 326
3361 3361 23S 1 3 2900   v4 U:A cWW       Strong T 16 20 13 0.72 0.53 0.8 1.33 0.8 0.9 -0.39 -0.44 0.01 0.24 325
3368 3368 23S 1 4 2899   v4 U:A cWW       Strong T 30 28 18 0.62 0.78 0.87 1.65 0.87 0.89 -0.41 -0.49 0.02 0.25 325
3375 3375 23S 1 5 2898   v4 A:U cWW       Strong T 20 15 9 0.51 0.8 0.97 1.76 0.97 0.98 0.18 0.27 0.02 0.26 326
3382 3382 23S 1 6 2897   v4 A:U cWW       Strong T 16 13 11 0.76 0.8 0.96 1.76 0.96 0.97 0.26 0.22 0.02 0.26 326
3389 3389 23S 1 7 2896   v4 G:C cWW       Strong T 20 16 10 0.56 0.83 0.95 1.78 0.95 0.96 -0.02 -0.04 0.01 0.27 329
1 1 16S 1 9 25   v4 G:C cWW       Strong T 32 27 12 0.41 0.94 0.97 1.91 0.97 0.98 0.52 0.64 0.0 0.43 3661
8 8 16S 1 10 24   v4 A:U cWW       Strong T 33 22 8 0.29 0.93 0.97 1.9 0.97 0.99 0.44 0.56 0.0 0.44 3741
15 15 16S 1 11 23   v4 G:C cWW       Strong T 23 16 10 0.51 0.26 0.96 1.21 0.96 0.96 1.61 1.84 0.0 0.45 3799
22 22 16S 1 12 22   v4 U:G cWW       Strong T 35 31 9 0.27 0.89 0.97 1.86 0.25 0.93 0.79 0.88 0.0 0.46 3888
3403 3403 23S 2 15 525   v4 G:U cWW       Strong T 34 52 18 0.42 0.3 0.6 0.89 0.44 0.89 0.32 0.14 0.02 0.63 671
3410 3410 23S 2 16 524   v4 C:G cWW       Strong T 33 53 22 0.51 0.8 0.86 1.66 0.86 0.98 -0.06 -0.17 0.01 0.63 672
36 36 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong T 13 16 7 0.48 0.15 0.0 0.15 0.99 0.99 1.92 1.9 0.0 0.46 3912
3417 3417 23S 2 17 523   v4 G:C cWW       Strong T 17 27 10 0.46 0.83 0.94 1.77 0.94 0.98 -0.39 0.09 0.15 0.47 676
43 43 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong T 44 41 21 0.49 0.62 0.97 1.6 0.97 0.98 1.62 1.59 0.0 0.46 3930
3424 3424 23S 2 18 522   v4 U:A cWW       Strong T 25 45 16 0.46 0.86 0.94 1.8 0.94 0.98 -0.34 0.31 0.15 0.47 676
50 50 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong T 49 31 7 0.17 0.71 0.96 1.67 0.96 0.96 1.38 1.41 0.0 0.46 3959
3431 3431 23S 2 19 521   v4 A:U cWW       Strong T 34 55 18 0.4 0.7 0.79 1.48 0.79 0.96 -0.81 -0.02 0.14 0.47 677
3438 3438 23S 2 20 520   v4 C:G cWW       Strong T 38 48 27 0.63 0.9 0.93 1.83 0.93 0.98 -0.74 -0.66 0.01 0.47 677
3445 3445 23S 2 21 519   v4 A:U cWW       Strong T 37 43 25 0.62 0.49 0.74 1.24 0.78 0.98 -0.67 -0.36 0.02 0.47 677
3452 3452 23S 2 22 518   v4 C:G cWW       Strong T 28 34 11 0.35 0.67 0.86 1.53 0.86 0.99 -0.39 -0.12 0.01 0.47 676
3459 3459 23S 2 23 517   v4 G:C cWW       Strong T 17 19 11 0.61 0.86 0.97 1.82 0.97 0.99 -0.03 -0.01 0.02 0.47 677
3466 3466 23S 2 24 516   v4 G:C cWW       Strong T 15 29 10 0.46 0.89 0.97 1.85 0.97 0.99 -0.14 -0.13 0.02 0.47 676
57 57 16S 3 27 556   v4 G:C cWW       Strong T 50 80 26 0.4 0.85 0.96 1.81 0.96 0.96 0.83 0.96 0.0 0.52 4476
64 64 16S 3 28 555   v4 A:U cWW       Strong T 69 103 33 0.38 0.7 0.82 1.53 0.82 0.97 0.51 0.55 0.0 0.58 4977
71 71 16S 3 29 554   v4 U:A cWW       Strong T 103 125 48 0.42 0.9 0.94 1.84 0.94 0.96 0.39 0.48 0.01 0.59 5079
78 78 16S 3 30 553   v4 U:A cWW       Strong T 98 108 65 0.63 0.96 0.97 1.93 0.97 0.99 0.14 0.21 0.0 0.6 5157
3473 3473 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong T 37 23 12 0.4 0.61 0.88 1.48 0.89 0.91 0.21 -0.49 0.19 0.47 678
3480 3480 23S 3 31 474   v4 C:G cWW       Strong T 44 33 18 0.47 0.77 0.88 1.65 0.88 0.89 0.16 0.0 0.02 0.63 678
85 85 16S 3 32 552   v4 A:U cWW       Strong T 23 28 12 0.47 0.95 0.99 1.94 0.99 0.99 1.0 1.09 0.0 0.61 5253
3487 3487 23S 3 32 473   v4 C:G cWW       Strong T 16 16 9 0.56 0.53 0.96 1.5 0.96 0.97 1.47 1.29 0.02 0.64 681
92 92 16S 3 33 551   v4 A:U cWW       Strong T 20 22 11 0.52 0.96 0.99 1.96 0.99 1.0 1.17 1.25 0.0 0.62 5282
99 99 16S 3 34 550   v4 C:G cWW       Strong T 68 55 28 0.46 0.38 0.81 1.19 0.81 0.99 0.74 1.37 0.0 0.63 5366
3494 3494 23S 4 35 445   v4 G:C cWW       Strong T 13 12 9 0.72 0.77 0.99 1.76 0.99 0.99 1.58 1.49 0.02 0.63 681
113 113 16S 3 36 548   v4 C:G cWW       Strong T 55 59 30 0.53 0.85 0.98 1.83 0.98 0.99 1.45 1.52 0.0 0.65 5516
3501 3501 23S 4 36 444   v4 G:C cWW       Strong T 15 15 9 0.6 0.95 0.98 1.94 0.98 0.99 0.68 0.7 0.02 0.63 682
3508 3508 23S 4 37 442   v4 C:G cWW       Strong T 36 34 20 0.57 0.77 0.95 1.72 0.95 0.99 0.83 0.85 0.03 0.63 680
3515 3515 23S 4 38 441   v4 A:U cWW       Strong T 34 39 31 0.85 0.96 0.98 1.95 0.98 0.99 0.09 0.07 0.03 0.63 680
3522 3522 23S 4 39 440   v4 G:C cWW       Strong T 47 63 37 0.67 0.85 0.92 1.77 0.92 0.92 -0.2 -0.19 0.02 0.62 711
134 134 16S 4 40 402   v4 C:G cWW       Strong T 87 84 53 0.62 0.94 0.98 1.92 0.98 0.99 0.93 0.99 0.0 0.69 5927
3529 3529 23S 4 40 439   v4 U:A cWW       Strong T 38 48 32 0.74 0.96 0.98 1.95 0.98 1.0 -0.59 -0.54 0.01 0.5 709
141 141 16S 4 41 401   v4 G:C cWW       Strong T 83 97 58 0.64 0.65 0.9 1.55 0.9 0.91 0.74 0.77 0.0 0.69 5909
3536 3536 23S 4 41 438   v4 C:G cWW       Strong T 42 47 35 0.79 0.99 0.99 1.99 0.99 1.0 -0.77 -0.69 0.02 0.5 711
148 148 16S 4 42 400   v4 G:C cWW       Strong T 62 67 42 0.65 0.96 0.99 1.95 0.99 0.99 0.77 0.84 0.0 0.7 5987
3543 3543 23S 4 42 437   v4 A:U cWW       Strong T 29 36 23 0.71 0.99 0.99 1.98 0.99 1.0 -0.3 -0.3 0.02 0.5 711
155 155 16S 4 43 399   v4 C:G cWW       Strong T 135 146 92 0.66 0.6 0.86 1.46 0.86 0.88 0.94 0.81 0.0 0.7 5974
3550 3550 23S 4 43 436   v4 G:C cWW       Strong T 33 39 27 0.75 0.88 0.94 1.82 0.94 0.95 -0.68 -0.68 0.02 0.47 714
162 162 16S 4 44 398   v4 A:U cWW       Strong T 106 113 69 0.63 0.71 0.82 1.53 0.82 0.83 0.73 0.74 0.0 0.71 6046
3557 3557 23S 4 44 434   v4 A:U cWW       Strong T 23 36 12 0.41 0.55 0.88 1.43 0.88 0.91 -0.15 -0.23 0.03 0.5 712
169 169 16S 4 45 396   v4 G:C cWW       Strong T 134 168 78 0.52 0.51 0.65 1.15 0.63 0.81 0.29 0.14 0.0 0.7 6007
3564 3564 23S 4 45 433   v4 G:C cWW       Strong T 22 34 15 0.54 0.44 0.82 1.26 0.82 0.86 -0.3 -0.28 0.04 0.49 713
176 176 16S 4 46 395   v4 G:C cWW       Strong T 86 90 50 0.57 0.82 0.95 1.77 0.95 0.99 1.05 1.04 0.0 0.71 6074
3571 3571 23S 4.1 46 179   v4 G:C cWW       Strong T 19 40 11 0.37 0.7 0.83 1.53 0.79 0.79 -0.86 -0.65 0.07 0.38 714
183 183 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong T 85 51 22 0.32 0.69 0.89 1.58 0.89 0.9 0.75 0.66 0.0 0.71 6093
3578 3578 23S 4.1 47 178   v4 C:G cWW       Strong T 12 7 4 0.42 0.42 0.97 1.39 0.97 1.0 0.15 0.35 0.03 0.46 711
190 190 16S 5 52 359   v4 C:G cWW       Strong T 73 73 55 0.75 0.95 0.98 1.94 0.98 0.99 0.53 0.52 0.0 0.72 6188
197 197 16S 5 53 358   v4 A:U cWW       Strong T 22 16 9 0.47 0.93 0.98 1.91 0.98 0.99 1.07 1.15 0.0 0.72 6181
3592 3592 23S 5 54 116   v4 G:C cWW       Strong T 12 16 10 0.71 0.23 0.83 1.06 0.83 1.0 0.35 0.01 0.01 0.5 720
3599 3599 23S 5 55 115   v4 G:C cWW       Strong T 13 7 4 0.4 0.91 0.98 1.9 0.98 1.0 0.09 0.06 0.01 0.5 724
3606 3606 23S 5 56 114   v4 A:U cWW       Strong T 21 25 19 0.83 0.93 0.98 1.91 0.98 0.99 -0.25 -0.26 0.01 0.5 725
218 218 16S 5 57 355   v4 G:C cWW       Strong T 15 9 2 0.17 0.04 0.0 0.04 0.99 0.99 1.91 1.94 0.0 0.74 6323
3613 3613 23S 6 57 70   v4 C:G cWW       Strong T 9 6 7 0.93 0.91 0.99 1.9 0.99 1.0 0.21 0.25 0.0 0.51 726
3620 3620 23S 6 58 69   v4 G:C cWW       Strong T 4 7 3 0.55 0.55 0.98 1.53 0.98 0.99 0.47 0.46 0.0 0.52 733
3627 3627 23S 6 59 68   v4 U:G cWW       Strong T 25 21 15 0.65 0.46 0.68 1.14 0.68 1.0 -0.39 -0.22 0.0 0.52 735
232 232 16S 6 61 106   v4 G:C cWW       Strong T 23 39 13 0.42 0.6 0.99 1.58 0.99 0.99 1.79 1.75 0.0 0.77 6539
3634 3634 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong T 36 33 21 0.61 0.73 0.84 1.57 0.84 0.89 -0.6 -0.87 0.12 0.39 734
3641 3641 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong T 42 27 17 0.49 0.44 0.59 1.02 0.59 0.6 -0.67 -0.83 0.12 0.4 738
246 246 16S 6 63 104   v4 C:G cWW       Strong T 57 41 27 0.55 0.67 0.99 1.66 0.99 1.0 0.79 0.5 0.11 0.57 6600
3655 3655 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong T 26 25 20 0.78 0.8 0.89 1.68 0.89 0.94 -0.75 -0.9 0.11 0.39 740
253 253 16S 6 66 103   v4 A:U cWW       Strong T 112 108 77 0.7 0.9 0.96 1.85 0.96 0.97 0.28 0.34 0.01 0.68 6563
260 260 16S 6 67 102   v4 C:G cWW       Strong T 58 66 40 0.65 0.93 0.98 1.91 0.98 0.99 0.41 0.47 0.01 0.69 6597
3669 3669 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong T 33 37 15 0.43 0.48 0.73 1.21 0.73 0.82 -0.45 -0.59 0.0 0.52 740
274 274 16S 6 69 99   v4 G:C cWW       Strong T 132 139 48 0.35 0.6 0.79 1.39 0.79 0.94 -0.55 -0.67 0.01 0.49 6585
281 281 16S 6 70 98   v4 U:A cWW       Strong T 186 181 107 0.58 0.79 0.86 1.66 0.86 0.96 -0.92 -0.85 0.0 0.48 6610
288 288 16S 6 73 97   v4 C:G cWW       Strong T 60 53 23 0.41 0.84 0.94 1.78 0.94 0.97 -0.73 -0.71 0.0 0.25 6642
295 295 16S 6 74 96   v4 A:U cWW       Strong T 75 74 38 0.51 0.8 0.9 1.7 0.9 0.95 -0.7 -0.81 0.05 0.17 6634
302 302 16S 6 75 95   v4 G:C cWW       Strong T 93 93 54 0.58 0.55 0.69 1.23 0.69 0.9 -0.76 -0.83 0.0 0.2 6635
309 309 16S 6 76 93   v4 G:U cWW       Strong T 124 130 47 0.37 0.47 0.59 1.06 0.59 0.78 -0.8 -0.79 0.01 0.2 6662
3676 3676 23S 7 76 110   v4 C:G cWW       Strong T 25 14 8 0.41 0.25 0.8 1.05 0.8 0.92 -0.09 0.01 0.0 0.51 745
316 316 16S 6 77 92   v4 A:U cWW       Strong T 159 163 53 0.33 0.54 0.66 1.2 0.66 0.87 -0.89 -0.89 0.0 0.26 6626
3683 3683 23S 7 77 109   v4 G:C cWW       Strong T 35 36 28 0.79 0.68 0.85 1.52 0.85 0.86 -0.65 -0.59 0.01 0.51 745
323 323 16S 6 78 91   v4 A:U cWW       Strong T 197 184 87 0.46 0.69 0.77 1.46 0.77 0.91 -0.96 -0.96 0.01 0.32 6638
3690 3690 23S 7 78 108   v4 U:G cWW       Strong T 43 51 24 0.51 0.32 0.52 0.83 0.66 0.96 -0.77 -0.7 0.08 0.44 745
330 330 16S 6 79 90   v4 G:C cWW       Strong T 243 240 128 0.53 0.7 0.78 1.49 0.78 0.95 -0.95 -0.96 0.01 0.42 6648
3697 3697 23S 7 79 107   v4 C:G cWW       Strong T 43 35 25 0.64 0.6 0.81 1.41 0.81 0.85 -0.66 -0.49 0.0 0.51 745
337 337 16S 6 80 89   v4 A:U cWW       Strong T 281 291 195 0.68 0.85 0.9 1.75 0.9 0.97 -0.87 -0.9 0.01 0.51 6611
3704 3704 23S 7 80 106   v4 G:C cWW       Strong T 16 15 10 0.65 0.3 0.82 1.12 0.82 0.84 -0.15 0.12 0.0 0.51 745
344 344 16S 6 81 88   v4 A:U cWW       Strong T 264 263 201 0.76 0.91 0.94 1.85 0.94 0.99 -0.82 -0.77 0.01 0.55 6644
3711 3711 23S 7 81 105   v4 G:C cWW       Strong T 23 13 10 0.56 0.73 0.96 1.7 0.96 0.98 -0.06 -0.27 0.1 0.4 744
351 351 16S 6 82 87   v4 G:C cWW       Strong T 232 196 152 0.71 0.89 0.94 1.83 0.94 0.99 -0.68 -0.59 0.01 0.56 6676
3718 3718 23S 7 82 104   v4 U:A tSH       Strong T 24 27 9 0.35 0.51 0.82 1.33 0.09 0.75 -0.57 -0.66 0.08 0.4 745
3725 3725 23S 7 85 97   v4 G:C cWW       Strong T 11 14 9 0.72 0.71 0.96 1.68 0.96 0.98 -0.21 -0.23 0.01 0.4 746
3732 3732 23S 7 86 96   v4 G:C cWW       Strong T 40 33 29 0.8 0.79 0.93 1.72 0.93 0.99 -0.68 -0.58 0.01 0.4 746
3739 3739 23S 7 87 95   v4 U:A cWW       Strong T 28 31 23 0.78 0.85 0.95 1.81 0.95 0.96 -0.55 -0.6 0.01 0.4 746
358 358 16S 6.1 113 314   v4 G:C cWW       Strong T 11 8 7 0.74 0.98 1.0 1.98 1.0 1.0 1.26 1.27 0.0 0.81 6916
365 365 16S 6.1 114 313   v4 U:A cWW       Strong T 11 9 9 0.9 0.65 0.99 1.64 0.99 1.0 1.85 1.86 0.0 0.81 6906
372 372 16S 6.1 115 312   v4 G:C cWW       Strong T 19 18 12 0.65 0.97 0.99 1.96 0.99 1.0 1.22 1.21 0.0 0.8 6856
3746 3746 23S 8 121 130   v4 G:C cWW       Strong T 18 22 14 0.7 0.63 0.9 1.53 0.9 0.98 -0.06 -0.16 0.01 0.51 753
379 379 16S 7 122 239   v4 G:U cWW       Strong T 144 141 37 0.26 0.53 0.7 1.23 0.19 0.55 0.55 0.21 0.0 0.81 6923

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");