Base-pair collective (covariation) scores

61 rows where group_code = "T", molecule = "23S" and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, PE, Cov3, WCGU, DfDel

conformation 3

strength 1

  • Weak · 61 ✖

molecule 1

  • 23S · 61 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3396 3396 23S 1 8 2895   v4 C:G cWW       Weak T 31 29 7 0.23 0.57 0.73 1.3 0.73 0.92 -0.23 -0.26 0.0 0.27 329
3662 3662 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak T 15 8 3 0.26 0.38 0.94 1.32 0.94 0.95 -0.29 -0.15 0.12 0.39 740
3872 3872 23S 10 158 168   v4 U:G cWW       Weak T 18 23 8 0.39 0.1 0.0 0.1 0.27 0.9 -0.27 -0.52 0.01 0.43 759
4054 4054 23S 16 274 363   v4 C:G cWW       Weak T 32 17 4 0.16 0.32 0.46 0.78 0.46 0.56 -0.97 -0.85 0.16 0.2 872
4061 4061 23S 18 281 359   v4 C:G cWW       Weak T 41 56 13 0.27 0.32 0.43 0.75 0.46 0.61 -0.97 -0.87 0.09 0.4 869
4082 4082 23S 18 284 356   v4 U:G cWW       Weak T 73 65 23 0.33 0.35 0.51 0.86 0.51 0.63 -0.91 -0.88 0.0 0.51 870
4145 4145 23S 18 293 347   v4 U:A cWW       Weak T 52 48 20 0.4 0.34 0.69 1.03 0.69 0.75 -0.58 -0.56 0.01 0.56 888
4243 4243 23S 20 327 335   v4 G:C cWW       Weak T 3 1 1 0.5 0.82 0.99 1.81 0.99 0.99 0.49 0.52 0.0 0.63 891
4271 4271 23S 21 378 396   v4 C:G cWW       Weak T 25 15 11 0.55 0.1 0.0 0.1 0.55 0.99 -0.24 0.36 0.0 0.65 893
4299 4299 23S 21 382 392   v4 A:U cWW       Weak T 28 18 7 0.3 0.17 0.0 0.17 0.37 0.52 -0.54 0.05 0.0 0.64 894
4460 4460 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak T 16 29 6 0.27 0.43 0.77 1.2 0.22 0.35 -0.24 -0.4 0.0 0.62 881
4516 4516 23S 25.1 564 577   v4 C:G cWW       Weak T 3 4 1 0.29 0.4 0.99 1.39 0.99 0.99 1.81 1.78 0.0 0.84 888
4656 4656 23S 27 600 657   v4 G:U cWW       Weak T 4 6 1 0.2 0.01 0.0 0.01 0.28 1.0 0.6 0.05 0.0 0.64 882
4754 4754 23S 31 641 647   v4 U:G cWW       Weak T 16 10 3 0.23 0.05 0.0 0.05 0.17 0.98 -0.33 -0.2 0.0 0.41 883
4761 4761 23S 32 671 809   v4 C:G cWW       Weak T 2 3 1 0.4 0.77 1.0 1.77 1.0 1.0 1.84 1.8 0.0 0.8 845
4824 4824 23S 33 687 775   v4 C:G No BP       Weak T 11 7 0 0.0 0.29 0.97 1.27 0.97 0.98 1.72 1.8 0.0 0.84 886
4880 4880 23S 33 695 767   v4 G:U cWW       Weak T 39 45 22 0.52 0.12 0.0 0.12 0.22 0.99 1.11 1.32 0.0 0.85 887
4929 4929 23S 34 703 729   v4 U:G No BP       Weak T 40 4 1 0.04 0.02 0.0 0.02 0.17 0.93 0.55 1.49 0.01 0.79 887
4936 4936 23S 34 707 724   v4 G:U cWW       Weak T 13 7 1 0.1 0.16 0.0 0.16 0.07 0.99 0.31 0.5 0.0 0.63 887
5132 5132 23S 37 826 831   v4 U:G cWW       Weak T 15 8 3 0.26 0.04 0.0 0.04 0.23 0.99 0.99 1.51 0.0 0.8 856
5706 5706 23S 42 1051 1108   v4 G:U cWW       Weak T 24 17 6 0.29 0.68 0.81 1.49 0.81 0.98 -0.2 -0.14 0.01 0.66 858
5951 5951 23S 46 1215 1234   v4 G:U cWW       Weak T 12 4 1 0.12 0.55 0.96 1.51 0.03 0.94 0.25 0.36 0.0 0.61 871
6413 6413 23S 54 1415 1587   v4 U:G cWW       Weak T 41 22 7 0.22 0.22 0.36 0.58 0.4 0.63 -0.78 -0.93 0.04 0.47 857
6511 6511 23S 56 1436 1556   v4 G:C cWW       Weak T 27 37 11 0.34 0.19 0.0 0.19 0.64 0.85 -0.22 -0.49 0.0 0.56 860
6525 6525 23S 56 1440 1551   v4 U:A cWW       Weak T 53 48 14 0.28 0.36 0.55 0.91 0.51 0.84 -0.87 -0.75 0.01 0.51 859
6560 6560 23S 57 1445 1466   v4 G:U cWW       Weak T 34 24 14 0.48 0.32 0.73 1.05 0.13 0.78 -0.63 -0.55 0.03 0.48 861
6609 6609 23S 58 1468 1524   v4 U:G cWW       Weak T 46 35 8 0.2 0.25 0.38 0.63 0.38 0.57 -0.93 -0.79 0.01 0.52 861
6644 6644 23S 58 1478 1513   v4 G:U cWW       Weak T 21 41 8 0.26 0.16 0.0 0.16 0.41 0.8 -0.51 -0.85 0.01 0.49 860
6665 6665 23S 58 1481 1510   v4 U:G cWW       Weak T 21 22 4 0.19 0.4 0.66 1.06 0.26 0.45 -0.83 -0.92 0.05 0.24 861
6679 6679 23S 58 1483 1506   v4 G:U cWW       Weak T 42 39 14 0.35 0.46 0.63 1.08 0.63 0.75 -0.72 -0.88 0.02 0.49 861
6987 6987 23S 63 1707 1751   v4 G:U cWW       Weak T 21 35 10 0.36 0.05 0.0 0.05 0.4 0.98 0.06 -0.18 0.0 0.56 833
7127 7127 23S 64 1770 1982   v4 G:U cWW       Weak T 28 35 8 0.25 0.58 0.75 1.33 0.6 0.98 0.37 0.44 0.0 0.77 809
7148 7148 23S 65 1775 1789   v4 U:A tHS       Weak T 3 7 1 0.2 0.48 0.99 1.46 0.99 0.99 1.88 1.79 0.0 0.81 842
7225 7225 23S 66 1799 1820   v4 G:U No BP       Weak T 3 10 1 0.15 0.01 0.0 0.01 0.24 0.99 1.63 0.93 0.0 0.78 842
7239 7239 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak T 9 27 4 0.22 0.61 0.81 1.43 0.04 0.33 -0.16 -0.58 0.02 0.58 840
7295 7295 23S 68 1835 1905   v4 G:C cWW       Weak T 1 3 1 0.5 0.17 0.0 0.17 0.99 1.0 1.86 1.82 0.0 0.81 851
7323 7323 23S 68 1841 1901   v4 U:A cWW       Weak T 2 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.85 1.88 0.0 0.81 852
7330 7330 23S 68 1842 1898   v4 G:U cWW       Weak T 2 8 0 0.0 0.0 0.0 0.0 0.01 0.99 1.86 1.76 0.0 0.81 852
7379 7379 23S 68 1851 1891   v4 U:G cWW       Weak T 7 10 5 0.59 0.2 0.0 0.2 0.02 0.96 0.34 0.28 0.0 0.58 867
7470 7470 23S 69 1907 1923   v4 G:U cWW       Weak T 2 5 1 0.29 0.2 0.0 0.2 0.01 1.0 1.85 1.8 0.0 0.8 850
7498 7498 23S 69 1911 1919   v4 U:A No BP       Weak T 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.86 0.0 0.8 852
7519 7519 23S 71 1945 1961   v4 G:C cWW       Weak T 5 7 2 0.33 0.04 0.0 0.04 0.98 0.98 1.92 1.83 0.0 0.81 848
7533 7533 23S 71 1947 1959   v4 C:G cWW       Weak T 12 5 4 0.47 0.18 0.0 0.18 0.88 1.0 1.35 1.72 0.0 0.81 848
7673 7673 23S 73 2056 2612   v4 G:C cWW       Weak T 8 7 2 0.27 0.64 0.89 1.53 0.89 0.89 1.09 0.84 0.0 0.69 726
7694 7694 23S 74 2065 2445   v4 C:G cWW       Weak T 2 1 1 0.67 0.64 0.99 1.64 0.99 1.0 1.85 1.87 0.0 0.79 832
7757 7757 23S 74 2075 2434   v4 U:A No BP       Weak T 4 8 3 0.5 0.05 0.0 0.05 0.98 0.98 1.94 1.83 0.0 0.81 845
7764 7764 23S 75 2077 2243   v4 A:U cWW       Weak T 4 2 1 0.33 0.22 0.99 1.21 0.99 0.99 1.86 1.93 0.0 0.81 845
7890 7890 23S 76 2100 2189   v4 G:U cWW       Weak T 23 26 6 0.24 0.23 0.77 1.0 0.21 0.97 -0.17 -0.29 0.0 0.55 847
7953 7953 23S 76 2109 2180   v4 U:U cWW   3°: base pair   Weak T 13 12 4 0.32 0.73 0.9 1.63 0.33 0.35 -0.22 -0.41 0.0 0.55 847
7988 7988 23S 77 2120 2178   v4 G:C cWW       Weak T 20 16 7 0.39 0.42 0.67 1.09 0.67 0.98 -0.21 -0.33 0.0 0.55 847
8044 8044 23S 78 2136 2155   v4 G:U cWW       Weak T 41 44 17 0.4 0.27 0.57 0.84 0.49 0.91 -0.82 -0.71 0.01 0.37 847
8093 8093 23S 78 2143 2148   v4 C:G cWW       Weak T 8 3 1 0.18 0.02 0.0 0.02 0.7 1.0 -0.51 -0.16 0.0 0.37 848
8191 8191 23S 80 2249 2255   v4 U:G No BP       Weak T 2 10 1 0.17 0.11 0.0 0.11 0.04 0.99 1.91 1.68 0.0 0.81 845
8275 8275 23S 83 2291 2341   v4 U:G cWW       Weak T 11 13 5 0.42 0.23 0.84 1.07 0.2 0.99 -0.04 0.07 0.0 0.56 848
8387 8387 23S 85.1 2328 2387   v4 A:U cWW   3°: pseudoknot   Weak T 1 24 1 0.08 0.2 0.0 0.2 0.99 0.99 0.47 0.74 0.18 0.56 848
8436 8436 23S 86 2351 2366   v4 G:A cWW   3°: base pair   Weak T 59 28 12 0.28 0.11 0.0 0.11 0.22 0.24 0.14 0.78 0.01 0.76 849
8562 8562 23S 89 2455 2496   v4 G:C cWW       Weak T 10 8 3 0.33 0.62 0.79 1.41 0.79 1.0 0.9 0.47 0.0 0.79 828
8590 8590 23S 89 2460 2490   v4 U:G cWW       Weak T 1 3 0 0.0 0.07 0.0 0.07 0.01 0.83 1.85 1.25 0.0 0.79 828
8849 8849 23S 93 2592 2601   v4 G:C cWW       Weak T 3 7 0 0.0 0.19 0.0 0.19 0.98 0.99 1.92 1.78 0.01 0.7 734
9003 9003 23S 95 2652 2668   v4 C:G cWW       Weak T 50 46 21 0.44 0.29 0.56 0.85 0.56 0.74 0.58 0.3 0.0 0.7 736
9108 9108 23S 96 2696 2711   v4 U:A cWW       Weak T 8 13 5 0.48 0.18 0.0 0.18 0.82 0.94 0.27 -0.07 0.0 0.49 727

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");