Base-pair collective (covariation) scores

870 rows where group_code = "T" and molecule = "23S" sorted by position_1

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conformation 9

strength 5

molecule 1

  • 23S · 870 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3347 3347 23S 1 1 2902   v4 G:C cWW       Strong T 22 22 9 0.41 0.64 0.86 1.5 0.86 0.94 -0.54 -0.28 0.11 0.21 327
3354 3354 23S 1 2 2901   v4 G:C cWW       Strong T 25 23 8 0.33 0.76 0.88 1.65 0.88 0.92 -0.7 -0.5 0.08 0.23 326
3361 3361 23S 1 3 2900   v4 U:A cWW       Strong T 16 20 13 0.72 0.53 0.8 1.33 0.8 0.9 -0.39 -0.44 0.01 0.24 325
3368 3368 23S 1 4 2899   v4 U:A cWW       Strong T 30 28 18 0.62 0.78 0.87 1.65 0.87 0.89 -0.41 -0.49 0.02 0.25 325
3375 3375 23S 1 5 2898   v4 A:U cWW       Strong T 20 15 9 0.51 0.8 0.97 1.76 0.97 0.98 0.18 0.27 0.02 0.26 326
3382 3382 23S 1 6 2897   v4 A:U cWW       Strong T 16 13 11 0.76 0.8 0.96 1.76 0.96 0.97 0.26 0.22 0.02 0.26 326
3389 3389 23S 1 7 2896   v4 G:C cWW       Strong T 20 16 10 0.56 0.83 0.95 1.78 0.95 0.96 -0.02 -0.04 0.01 0.27 329
3396 3396 23S 1 8 2895   v4 C:G cWW       Weak T 31 29 7 0.23 0.57 0.73 1.3 0.73 0.92 -0.23 -0.26 0.0 0.27 329
3403 3403 23S 2 15 525   v4 G:U cWW       Strong T 34 52 18 0.42 0.3 0.6 0.89 0.44 0.89 0.32 0.14 0.02 0.63 671
3410 3410 23S 2 16 524   v4 C:G cWW       Strong T 33 53 22 0.51 0.8 0.86 1.66 0.86 0.98 -0.06 -0.17 0.01 0.63 672
3417 3417 23S 2 17 523   v4 G:C cWW       Strong T 17 27 10 0.46 0.83 0.94 1.77 0.94 0.98 -0.39 0.09 0.15 0.47 676
3424 3424 23S 2 18 522   v4 U:A cWW       Strong T 25 45 16 0.46 0.86 0.94 1.8 0.94 0.98 -0.34 0.31 0.15 0.47 676
3431 3431 23S 2 19 521   v4 A:U cWW       Strong T 34 55 18 0.4 0.7 0.79 1.48 0.79 0.96 -0.81 -0.02 0.14 0.47 677
3438 3438 23S 2 20 520   v4 C:G cWW       Strong T 38 48 27 0.63 0.9 0.93 1.83 0.93 0.98 -0.74 -0.66 0.01 0.47 677
3445 3445 23S 2 21 519   v4 A:U cWW       Strong T 37 43 25 0.62 0.49 0.74 1.24 0.78 0.98 -0.67 -0.36 0.02 0.47 677
3452 3452 23S 2 22 518   v4 C:G cWW       Strong T 28 34 11 0.35 0.67 0.86 1.53 0.86 0.99 -0.39 -0.12 0.01 0.47 676
3459 3459 23S 2 23 517   v4 G:C cWW       Strong T 17 19 11 0.61 0.86 0.97 1.82 0.97 0.99 -0.03 -0.01 0.02 0.47 677
3466 3466 23S 2 24 516   v4 G:C cWW       Strong T 15 29 10 0.46 0.89 0.97 1.85 0.97 0.99 -0.14 -0.13 0.02 0.47 676
3473 3473 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong T 37 23 12 0.4 0.61 0.88 1.48 0.89 0.91 0.21 -0.49 0.19 0.47 678
3480 3480 23S 3 31 474   v4 C:G cWW       Strong T 44 33 18 0.47 0.77 0.88 1.65 0.88 0.89 0.16 0.0 0.02 0.63 678
3487 3487 23S 3 32 473   v4 C:G cWW       Strong T 16 16 9 0.56 0.53 0.96 1.5 0.96 0.97 1.47 1.29 0.02 0.64 681
3494 3494 23S 4 35 445   v4 G:C cWW       Strong T 13 12 9 0.72 0.77 0.99 1.76 0.99 0.99 1.58 1.49 0.02 0.63 681
3501 3501 23S 4 36 444   v4 G:C cWW       Strong T 15 15 9 0.6 0.95 0.98 1.94 0.98 0.99 0.68 0.7 0.02 0.63 682
3508 3508 23S 4 37 442   v4 C:G cWW       Strong T 36 34 20 0.57 0.77 0.95 1.72 0.95 0.99 0.83 0.85 0.03 0.63 680
3515 3515 23S 4 38 441   v4 A:U cWW       Strong T 34 39 31 0.85 0.96 0.98 1.95 0.98 0.99 0.09 0.07 0.03 0.63 680
3522 3522 23S 4 39 440   v4 G:C cWW       Strong T 47 63 37 0.67 0.85 0.92 1.77 0.92 0.92 -0.2 -0.19 0.02 0.62 711
3529 3529 23S 4 40 439   v4 U:A cWW       Strong T 38 48 32 0.74 0.96 0.98 1.95 0.98 1.0 -0.59 -0.54 0.01 0.5 709
3536 3536 23S 4 41 438   v4 C:G cWW       Strong T 42 47 35 0.79 0.99 0.99 1.99 0.99 1.0 -0.77 -0.69 0.02 0.5 711
3543 3543 23S 4 42 437   v4 A:U cWW       Strong T 29 36 23 0.71 0.99 0.99 1.98 0.99 1.0 -0.3 -0.3 0.02 0.5 711
3550 3550 23S 4 43 436   v4 G:C cWW       Strong T 33 39 27 0.75 0.88 0.94 1.82 0.94 0.95 -0.68 -0.68 0.02 0.47 714
3557 3557 23S 4 44 434   v4 A:U cWW       Strong T 23 36 12 0.41 0.55 0.88 1.43 0.88 0.91 -0.15 -0.23 0.03 0.5 712
3564 3564 23S 4 45 433   v4 G:C cWW       Strong T 22 34 15 0.54 0.44 0.82 1.26 0.82 0.86 -0.3 -0.28 0.04 0.49 713
3571 3571 23S 4.1 46 179   v4 G:C cWW       Strong T 19 40 11 0.37 0.7 0.83 1.53 0.79 0.79 -0.86 -0.65 0.07 0.38 714
3578 3578 23S 4.1 47 178   v4 C:G cWW       Strong T 12 7 4 0.42 0.42 0.97 1.39 0.97 1.0 0.15 0.35 0.03 0.46 711
3585 3585 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant T 12 11 6 0.52 0.28 0.94 1.22 0.06 0.06 0.42 0.29 0.01 0.49 719
3592 3592 23S 5 54 116   v4 G:C cWW       Strong T 12 16 10 0.71 0.23 0.83 1.06 0.83 1.0 0.35 0.01 0.01 0.5 720
3599 3599 23S 5 55 115   v4 G:C cWW       Strong T 13 7 4 0.4 0.91 0.98 1.9 0.98 1.0 0.09 0.06 0.01 0.5 724
3606 3606 23S 5 56 114   v4 A:U cWW       Strong T 21 25 19 0.83 0.93 0.98 1.91 0.98 0.99 -0.25 -0.26 0.01 0.5 725
3613 3613 23S 6 57 70   v4 C:G cWW       Strong T 9 6 7 0.93 0.91 0.99 1.9 0.99 1.0 0.21 0.25 0.0 0.51 726
3620 3620 23S 6 58 69   v4 G:C cWW       Strong T 4 7 3 0.55 0.55 0.98 1.53 0.98 0.99 0.47 0.46 0.0 0.52 733
3627 3627 23S 6 59 68   v4 U:G cWW       Strong T 25 21 15 0.65 0.46 0.68 1.14 0.68 1.0 -0.39 -0.22 0.0 0.52 735
3634 3634 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong T 36 33 21 0.61 0.73 0.84 1.57 0.84 0.89 -0.6 -0.87 0.12 0.39 734
3641 3641 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong T 42 27 17 0.49 0.44 0.59 1.02 0.59 0.6 -0.67 -0.83 0.12 0.4 738
3648 3648 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant T 23 25 11 0.46 0.35 0.62 0.97 0.45 0.46 -0.16 -0.86 0.12 0.39 740
3655 3655 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong T 26 25 20 0.78 0.8 0.89 1.68 0.89 0.94 -0.75 -0.9 0.11 0.39 740
3662 3662 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak T 15 8 3 0.26 0.38 0.94 1.32 0.94 0.95 -0.29 -0.15 0.12 0.39 740
3669 3669 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong T 33 37 15 0.43 0.48 0.73 1.21 0.73 0.82 -0.45 -0.59 0.0 0.52 740
3676 3676 23S 7 76 110   v4 C:G cWW       Strong T 25 14 8 0.41 0.25 0.8 1.05 0.8 0.92 -0.09 0.01 0.0 0.51 745
3683 3683 23S 7 77 109   v4 G:C cWW       Strong T 35 36 28 0.79 0.68 0.85 1.52 0.85 0.86 -0.65 -0.59 0.01 0.51 745
3690 3690 23S 7 78 108   v4 U:G cWW       Strong T 43 51 24 0.51 0.32 0.52 0.83 0.66 0.96 -0.77 -0.7 0.08 0.44 745
3697 3697 23S 7 79 107   v4 C:G cWW       Strong T 43 35 25 0.64 0.6 0.81 1.41 0.81 0.85 -0.66 -0.49 0.0 0.51 745
3704 3704 23S 7 80 106   v4 G:C cWW       Strong T 16 15 10 0.65 0.3 0.82 1.12 0.82 0.84 -0.15 0.12 0.0 0.51 745
3711 3711 23S 7 81 105   v4 G:C cWW       Strong T 23 13 10 0.56 0.73 0.96 1.7 0.96 0.98 -0.06 -0.27 0.1 0.4 744
3718 3718 23S 7 82 104   v4 U:A tSH       Strong T 24 27 9 0.35 0.51 0.82 1.33 0.09 0.75 -0.57 -0.66 0.08 0.4 745
3725 3725 23S 7 85 97   v4 G:C cWW       Strong T 11 14 9 0.72 0.71 0.96 1.68 0.96 0.98 -0.21 -0.23 0.01 0.4 746
3732 3732 23S 7 86 96   v4 G:C cWW       Strong T 40 33 29 0.8 0.79 0.93 1.72 0.93 0.99 -0.68 -0.58 0.01 0.4 746
3739 3739 23S 7 87 95   v4 U:A cWW       Strong T 28 31 23 0.78 0.85 0.95 1.81 0.95 0.96 -0.55 -0.6 0.01 0.4 746
3746 3746 23S 8 121 130   v4 G:C cWW       Strong T 18 22 14 0.7 0.63 0.9 1.53 0.9 0.98 -0.06 -0.16 0.01 0.51 753
3753 3753 23S 8 122 129   v4 G:C cWW       Strong T 11 11 8 0.73 0.95 0.99 1.94 0.99 1.0 -0.24 -0.23 0.0 0.51 754
3760 3760 23S 8 123 128   v4 G:C cWW       Strong T 8 9 8 0.94 0.82 0.99 1.81 0.99 1.0 -0.06 -0.06 0.01 0.41 753
3767 3767 23S 9 131 148   v4 A:U cWW       Strong T 19 20 17 0.87 0.94 0.97 1.9 0.97 1.0 -0.56 -0.56 0.01 0.37 758
3774 3774 23S 9 132 147   v4 G:C cWW       Strong T 28 28 21 0.75 0.69 0.83 1.53 0.83 0.99 -0.78 -0.79 0.01 0.38 758
3781 3781 23S 9 133 146   v4 U:A cWW       Strong T 31 30 28 0.92 0.86 0.93 1.79 0.93 0.94 -0.73 -0.64 0.0 0.38 759
3788 3788 23S 9 134 145   v4 G:C cWW       Strong T 36 37 35 0.96 0.86 0.91 1.77 0.91 0.95 -0.95 -0.94 0.01 0.38 760
3795 3795 23S 9 135 144   v4 U:A cWW       Strong T 30 39 28 0.81 0.86 0.91 1.76 0.91 0.94 -0.93 -0.94 0.01 0.36 759
3802 3802 23S 9 136 143   v4 G:C cWW       Strong T 21 19 16 0.8 0.8 0.86 1.66 0.86 0.91 -0.95 -0.97 0.01 0.31 760
3809 3809 23S 9 137 142   v4 U:A cWW       Strong T 22 25 18 0.77 0.67 0.74 1.4 0.74 0.88 -0.96 -0.93 0.01 0.29 760
3816 3816 23S 10 150 176   v4 U:A cWW       Strong T 25 30 23 0.84 0.97 0.98 1.95 0.98 0.99 -0.37 -0.34 0.0 0.5 759
3823 3823 23S 10 151 175   v4 C:G cWW       Strong T 34 35 29 0.84 0.88 0.93 1.81 0.93 0.98 -0.69 -0.76 0.0 0.5 759
3830 3830 23S 10 152 174   v4 A:U cWW       Strong T 54 55 33 0.61 0.7 0.82 1.52 0.82 0.91 -0.82 -0.72 0.0 0.5 759
3837 3837 23S 10 153 173   v4 U:A cWW       Strong T 40 46 36 0.84 0.87 0.93 1.8 0.93 0.96 -0.77 -0.69 0.01 0.48 759
3844 3844 23S 10 154 172   v4 U:A cWW       Strong T 44 44 36 0.82 0.89 0.93 1.82 0.93 0.97 -0.75 -0.72 0.0 0.47 759
3851 3851 23S 10 155 171   v4 A:U cWW       Strong T 49 51 38 0.76 0.89 0.93 1.82 0.93 0.98 -0.9 -0.9 0.0 0.46 759
3858 3858 23S 10 156 170   v4 A:U cWW       Strong T 47 53 34 0.68 0.82 0.87 1.69 0.87 0.95 -0.91 -0.92 0.0 0.45 759
3865 3865 23S 10 157 169   v4 C:G cWW       Strong T 37 36 25 0.69 0.67 0.83 1.5 0.83 0.93 -0.72 -0.67 0.0 0.44 759
3872 3872 23S 10 158 168   v4 U:G cWW       Weak T 18 23 8 0.39 0.1 0.0 0.1 0.27 0.9 -0.27 -0.52 0.01 0.43 759
3879 3879 23S 11 183 214   v4 C:G cWW       Strong T 9 5 2 0.29 0.7 0.99 1.69 0.99 0.99 0.47 0.49 0.0 0.59 834
3886 3886 23S 11 184 212   v4 C:G cWW       Strong T 35 36 29 0.82 0.86 0.96 1.82 0.96 0.99 -0.16 -0.19 0.0 0.6 834
3893 3893 23S 11 185 211   v4 G:C cWW       Strong T 44 42 39 0.91 0.95 0.98 1.93 0.98 0.99 -0.38 -0.36 0.0 0.6 835
3900 3900 23S 11 186 210   v4 G:C cWW       Strong T 46 45 39 0.86 0.93 0.97 1.9 0.97 0.99 -0.33 -0.34 0.0 0.6 835
3907 3907 23S 11 187 209   v4 G:C cWW       Strong T 18 14 15 0.94 0.98 0.99 1.97 0.99 1.0 -0.3 -0.3 0.0 0.6 833
3914 3914 23S 11 188 208   v4 G:C cWW       Strong T 46 38 15 0.36 0.59 0.75 1.33 0.75 0.91 -0.53 -0.53 0.01 0.6 836
3921 3921 23S 11 194 201   v4 G:C cWW       Strong T 13 8 10 0.95 0.98 0.99 1.97 0.99 0.99 0.36 0.35 0.0 0.79 840
3928 3928 23S 11 195 200   v4 A:U tSH       Strong T 4 5 3 0.67 0.59 0.99 1.58 0.99 0.99 1.69 1.66 0.0 0.79 840
3935 3935 23S 12 224 231   v4 U:A cWW       Strong T 26 23 23 0.94 0.99 0.99 1.98 0.99 0.99 -0.75 -0.73 0.0 0.63 865
3942 3942 23S 12 225 230   v4 C:G cWW       Strong T 18 22 19 0.95 0.95 0.98 1.94 0.98 0.99 -0.14 -0.15 0.0 0.62 863
3949 3949 23S 12.1 234 430   v4 U:A tWW       Strong T 10 12 6 0.55 0.63 0.97 1.6 0.97 0.98 0.39 0.44 0.01 0.62 866
3956 3956 23S 13 235 262   v4 U:A cWW       Strong T 25 21 13 0.56 0.54 0.95 1.49 0.95 0.97 0.49 0.28 0.08 0.63 863
3963 3963 23S 13 236 261   v4 C:G cWW       Strong T 53 53 33 0.62 0.74 0.91 1.65 0.91 0.92 0.27 0.07 0.03 0.76 865
3970 3970 23S 13 237 260   v4 C:G cWW       Strong T 36 31 12 0.36 0.45 0.87 1.31 0.87 0.91 0.79 0.72 0.01 0.79 864
3977 3977 23S 13 238 259   v4 C:G cWW       Strong T 48 41 30 0.67 0.73 0.91 1.65 0.91 0.92 0.43 0.32 0.01 0.8 867
3984 3984 23S 13 239 258   v4 C:G cWW       Significant T 88 82 33 0.39 0.25 0.42 0.67 0.47 0.72 0.25 -0.19 0.01 0.8 866
3991 3991 23S 13 245 253   v4 G:C cWW       Strong T 23 25 14 0.58 0.78 0.9 1.67 0.9 0.93 0.31 0.35 0.0 0.82 868
3998 3998 23S 13 246 252   v4 C:G cWW       Strong T 43 33 24 0.63 0.64 0.83 1.48 0.83 0.99 0.18 0.49 0.0 0.81 868
4005 4005 23S 14 265 427   v4 A:U tSS       Strong T 12 8 4 0.4 0.22 0.97 1.19 0.97 0.98 0.53 0.58 0.0 0.63 869
4012 4012 23S 14 266 426   v4 G:C cWW       Strong T 9 9 9 1.0 0.97 1.0 1.97 1.0 1.0 0.45 0.48 0.0 0.63 868
4019 4019 23S 14 267 425   v4 C:G cWW       Strong T 32 28 25 0.83 0.92 0.98 1.91 0.98 0.99 -0.14 -0.1 0.0 0.63 868
4026 4026 23S 14 268 424   v4 C:G cWW       Strong T 25 27 20 0.77 0.84 0.96 1.8 0.96 0.98 -0.02 0.04 0.0 0.63 869
4033 4033 23S 16 271 366   v4 G:C cWW       Strong T 31 16 8 0.34 0.48 0.59 1.07 0.59 0.7 -0.97 -0.79 0.14 0.15 872
4040 4040 23S 16 272 365   v4 A:U cWW       Strong T 37 19 7 0.25 0.3 0.44 0.75 0.44 0.54 -0.98 -0.79 0.14 0.16 871

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");