Base-pair collective (covariation) scores

47 rows where group_code = "T", molecule = "16S" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, PE, PES, Cov3, WC, WCGU, DfDel, PNuc

conformation 4

strength 1

  • Weak · 47 ✖

molecule 1

  • 16S · 47 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
29 29 16S 1 13 21   v4 U:G No BP       Weak T 14 68 3 0.07 0.02 0.0 0.02 0.09 0.98 1.8 1.5 0.0 0.46 3890
106 106 16S 3 35 549   v4 G:C cWW       Weak T 75 71 20 0.27 0.26 0.87 1.13 0.87 0.98 1.57 1.35 0.0 0.63 5420
120 120 16S 3 37 547   v4 U:A tWS       Weak T 34 24 5 0.17 0.06 0.0 0.06 0.98 0.99 1.85 1.89 0.0 0.65 5551
127 127 16S 4 39 403   v4 G:C cWW       Weak T 95 98 28 0.29 0.45 0.82 1.27 0.82 0.83 1.17 0.93 0.0 0.68 5839
204 204 16S 5 54 357   v4 C:G cWW       Weak T 12 6 2 0.22 0.29 0.99 1.28 0.99 1.0 1.92 1.94 0.0 0.73 6225
211 211 16S 5 56 356   v4 U:A cWW       Weak T 4 4 1 0.25 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.73 6225
225 225 16S 5 58 354   v4 C:G cWW       Weak T 16 11 3 0.22 0.46 0.99 1.45 0.99 0.99 1.87 1.88 0.0 0.74 6357
239 239 16S 6 62 105   v4 U:G cWW       Weak T 65 65 17 0.26 0.21 0.96 1.16 0.03 0.97 1.64 1.66 0.0 0.76 6551
267 267 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak T 39 50 15 0.34 0.05 0.0 0.05 0.2 0.21 0.52 0.9 0.01 0.68 6584
778 778 16S 12 292 308   v4 G:C cWW       Weak T 24 16 6 0.3 0.43 0.91 1.34 0.91 0.99 0.81 0.72 0.02 0.76 7204
876 876 16S 14 342 347   v4 C:G cWW       Weak T 44 14 8 0.28 0.17 0.0 0.17 0.97 0.98 1.59 1.82 0.01 0.82 7119
911 911 16S 15 375 388   v4 U:G No BP       Weak T 10 30 4 0.2 0.05 0.0 0.05 0.01 0.99 1.94 1.68 0.02 0.8 6852
946 946 16S 16 406 436   v4 G:C cWW       Weak T 30 18 5 0.21 0.47 0.99 1.46 0.99 1.0 0.58 0.59 0.01 0.63 7096
974 974 16S 16 416 427   v4 G:U cWW       Weak T 48 72 10 0.17 0.07 0.0 0.07 0.19 0.97 0.35 0.05 0.0 0.61 7239
995 995 16S 16 419 424   v4 C:G cWW       Weak T 103 33 16 0.23 0.1 0.0 0.1 0.82 1.0 -0.04 0.46 0.02 0.59 7217
1254 1254 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak T 15 16 2 0.13 0.41 0.99 1.4 0.99 1.0 1.92 1.89 0.0 0.8 6825
1303 1303 16S 20 584 757   v4 G:U cWW       Weak T 72 70 11 0.15 0.09 0.0 0.09 0.07 0.96 1.25 1.72 0.02 0.82 7034
1366 1366 16S 21 594 645   v4 U:G cWW       Weak T 148 112 34 0.26 0.1 0.0 0.1 0.39 0.94 -0.25 0.01 0.0 0.61 7202
1380 1380 16S 21 597 643   v4 G:C cWW       Weak T 14 21 4 0.23 0.18 0.0 0.18 0.98 0.99 0.52 0.55 0.0 0.62 7236
1436 1436 16S 21 605 633   v4 U:G cWW       Weak T 22 56 8 0.2 0.14 0.0 0.14 0.04 0.92 0.43 0.08 0.01 0.61 7254
1443 1443 16S 21 606 632   v4 G:U No BP       Weak T 89 148 18 0.15 0.15 0.0 0.15 0.09 0.78 -0.06 -0.3 0.01 0.61 7251
1520 1520 16S 22 658 748   v4 C:G cWW       Weak T 281 264 67 0.25 0.33 0.52 0.86 0.48 0.57 -0.13 -0.06 0.01 0.77 7004
1562 1562 16S 22 666 740   v4 G:U cWW       Weak T 74 108 14 0.15 0.18 0.0 0.18 0.09 0.8 1.16 0.74 0.01 0.81 7111
1625 1625 16S 23 677 713   v4 U:G cWW       Weak T 120 186 37 0.24 0.17 0.0 0.17 0.34 0.87 1.12 0.7 0.0 0.84 7166
1674 1674 16S 23 684 706   v4 U:A cWW       Weak T 91 96 28 0.3 0.46 0.86 1.32 0.83 0.94 0.94 0.87 0.0 0.84 7176
1695 1695 16S 23 690 697   v4 G:U tSH       Weak T 103 33 7 0.1 0.28 0.87 1.15 0.12 0.94 1.05 1.41 0.0 0.84 7180
1870 1870 16S 26 832 854   v4 G:U cWW       Weak T 70 89 22 0.28 0.47 0.84 1.31 0.12 0.82 0.38 0.12 0.0 0.73 7262
1933 1933 16S 26.1 861 868   v4 G:C cWW       Weak T 171 108 19 0.14 0.26 0.83 1.09 0.82 0.88 0.65 0.83 0.04 0.76 6998
2024 2024 16S 28 925 1391   v4 G:U cWW       Weak T 12 31 1 0.05 0.05 0.0 0.05 0.11 0.99 1.9 1.45 0.0 0.69 5916
2080 2080 16S 28 935 1380   v4 A:U cWW       Weak T 20 24 4 0.18 0.92 0.99 1.91 0.99 0.99 1.31 1.34 0.0 0.73 6264
2115 2115 16S 29 942 1341   v4 G:U cWW       Weak T 16 5 1 0.1 0.16 0.0 0.16 0.0 1.0 1.83 1.96 0.01 0.77 6607
2171 2171 16S 30 950 1231   v4 U:G cWW       Weak T 15 26 1 0.05 0.01 0.0 0.01 0.12 0.99 1.92 1.43 0.0 0.78 6649
2213 2213 16S 31 960 975   v4 U:A No BP       Weak T 10 32 1 0.05 0.39 0.77 1.16 0.77 0.99 1.35 0.64 0.0 0.81 6871
2220 2220 16S 31 961 974   v4 U:A No BP       Weak T 48 99 4 0.05 0.07 0.0 0.07 0.67 0.84 1.73 0.59 0.0 0.8 6856
2451 2451 16S 34 1052 1206   v4 U:G cWW       Weak T 20 13 0 0.0 0.68 0.99 1.67 0.01 0.97 1.78 1.75 0.0 0.79 6733
2458 2458 16S 34 1053 1205   v4 G:U No BP       Weak T 7 20 0 0.0 0.01 0.0 0.01 0.18 1.0 1.35 1.79 0.0 0.81 6891
2479 2479 16S 34 1058 1199   v4 G:U cWW       Weak T 15 12 2 0.15 0.03 0.0 0.03 0.01 0.97 1.71 1.91 0.0 0.81 6900
2731 2731 16S 40 1158 1178   v4 C:G No BP       Weak T 12 156 4 0.05 0.13 0.0 0.13 0.96 0.97 0.97 1.02 0.12 0.71 7138
2738 2738 16S 40 1159 1177   v4 U:G No BP       Weak T 80 167 11 0.09 0.16 0.0 0.16 0.07 0.94 0.49 1.0 0.12 0.71 7135
2850 2850 16S 41 1255 1282   v4 G:C cWW       Weak T 14 18 3 0.19 0.27 0.98 1.26 0.98 0.99 0.49 0.44 0.0 0.6 7218
3018 3018 16S 44 1401 1501   v4 G:C cWW       Weak T 11 5 1 0.12 0.75 1.0 1.75 1.0 1.0 1.89 1.86 0.0 0.43 3713
3151 3151 16S 44 1425 1475   v4 U:G cWW       Weak T 119 92 24 0.23 0.24 0.47 0.72 0.2 0.59 -0.3 -0.09 0.0 0.54 5415
3193 3193 16S 44 1435 1466   v4 G:C cWW       Weak T 65 81 21 0.29 0.34 0.84 1.18 0.84 0.96 0.53 0.29 0.01 0.55 5555
3235 3235 16S 44 1442 1460   v4 G:C cWW       Weak T 113 96 18 0.17 0.08 0.0 0.08 0.29 0.32 -0.38 -0.17 0.02 0.52 5635
3277 3277 16S 45 1506 1529   v4 U:G No BP       Weak T 7 19 0 0.0 0.01 0.0 0.01 0.05 0.99 1.9 1.58 0.0 0.26 2260
3312 3312 16S 45 1511 1524   v4 G:C cWW       Weak T 36 75 12 0.22 0.46 0.9 1.36 0.9 0.98 1.24 1.04 0.01 0.28 2480
3319 3319 16S 45 1512 1523   v4 U:G cWW       Weak T 18 19 4 0.22 0.05 0.0 0.05 0.01 0.98 1.85 1.74 0.0 0.29 2528

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");