Base-pair collective (covariation) scores

5 rows where group_code = "T", molecule = "16S" and strength = "No Support" sorted by position_1

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Suggested facets: reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, XCons, YCons

conformation 2

strength 1

  • No Support · 5 ✖

molecule 1

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
1212 1212 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support T 3 5 0 0.0 0.04 0.0 0.04 1.0 1.0 1.96 1.96 0.0 0.77 6570
2017 2017 16S 28 924 1392   v4 C:G cWW       No Support T 14 9 3 0.26 0.07 0.0 0.07 0.99 1.0 1.94 1.96 0.0 0.7 5980
2129 2129 16S 30 944 1237   v4 G:C No BP       No Support T 3 4 0 0.0 0.04 0.0 0.04 1.0 1.0 1.95 1.97 0.0 0.78 6633
2234 2234 16S 31 963 972   v4 G:C cWW       No Support T 5 4 1 0.22 0.13 0.0 0.13 1.0 1.0 1.96 1.96 0.0 0.8 6866
2500 2500 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support T 7 21 2 0.14 0.74 0.98 1.72 0.98 1.0 1.64 1.56 0.0 0.79 6774

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");