Base-pair collective (covariation) scores

782 rows where group_code = "M", molecule = "23S" and strength = "Strong" sorted by position_1

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conformation 9

strength 1

  • Strong · 782 ✖

molecule 1

  • 23S · 782 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3353 3353 23S 1 1 2902   v4 G:C cWW       Strong M 6 9 5 0.67 0.58 0.71 1.29 0.71 0.86 -0.64 -0.71 0.02 0.09 34
3360 3360 23S 1 2 2901   v4 G:C cWW       Strong M 9 7 4 0.5 0.6 0.71 1.31 0.71 0.79 -0.88 -0.77 0.02 0.09 34
3367 3367 23S 1 3 2900   v4 U:A cWW       Strong M 4 6 7 1.0 0.75 0.89 1.64 0.89 0.89 -0.52 -0.49 0.02 0.09 34
3374 3374 23S 1 4 2899   v4 U:A cWW       Strong M 7 5 4 0.67 0.67 0.79 1.45 0.79 0.86 -0.78 -0.68 0.02 0.09 34
3381 3381 23S 1 5 2898   v4 A:U cWW       Strong M 8 7 5 0.67 0.6 0.78 1.38 0.78 0.89 -0.8 -0.71 0.01 0.09 34
3388 3388 23S 1 6 2897   v4 A:U cWW       Strong M 8 6 7 1.0 0.65 0.78 1.43 0.78 0.78 -0.64 -0.47 0.01 0.09 34
3395 3395 23S 1 7 2896   v4 G:C cWW       Strong M 8 5 5 0.77 0.64 0.81 1.46 0.81 0.89 -0.78 -0.62 0.01 0.09 34
3409 3409 23S 2 15 525   v4 G:U cWW       Strong M 17 24 14 0.68 0.69 0.83 1.52 0.83 0.92 0.49 -0.03 0.05 0.69 226
3416 3416 23S 2 16 524   v4 C:G cWW       Strong M 12 14 9 0.69 0.81 0.95 1.76 0.95 0.98 0.46 0.22 0.05 0.7 228
3423 3423 23S 2 17 523   v4 G:C cWW       Strong M 8 13 4 0.38 0.5 0.69 1.19 0.69 0.92 -0.61 0.35 0.49 0.15 228
3430 3430 23S 2 18 522   v4 U:A cWW       Strong M 8 20 8 0.57 0.93 0.96 1.88 0.96 0.96 -0.69 0.21 0.5 0.14 228
3437 3437 23S 2 19 521   v4 A:U cWW       Strong M 5 15 6 0.6 0.86 0.93 1.79 0.93 0.95 -0.64 -0.2 0.48 0.14 228
3444 3444 23S 2 20 520   v4 C:G cWW       Strong M 9 11 10 1.0 0.94 0.98 1.92 0.98 1.0 -0.6 -0.61 0.05 0.14 228
3451 3451 23S 2 21 519   v4 A:U cWW       Strong M 9 10 9 0.95 0.63 0.76 1.39 0.76 0.93 -0.58 -0.67 0.05 0.13 228
3458 3458 23S 2 22 518   v4 C:G cWW       Strong M 6 8 3 0.43 0.61 0.73 1.34 0.63 0.95 -0.67 -0.72 0.05 0.13 228
3465 3465 23S 2 23 517   v4 G:C cWW       Strong M 6 7 6 0.92 0.96 0.98 1.93 0.98 0.98 -0.64 -0.68 0.06 0.13 228
3472 3472 23S 2 24 516   v4 G:C cWW       Strong M 3 5 2 0.5 1.0 1.0 2.0 1.0 1.0 -0.45 -0.57 0.06 0.13 228
3479 3479 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong M 26 8 5 0.29 0.9 0.95 1.85 0.95 0.98 0.02 -0.6 0.64 0.14 229
3486 3486 23S 3 31 474   v4 C:G cWW       Strong M 37 20 14 0.49 0.54 0.67 1.2 0.67 0.67 -0.18 -0.1 0.02 0.7 231
3493 3493 23S 3 32 473   v4 C:G cWW       Strong M 13 13 7 0.54 0.43 0.91 1.34 0.91 0.93 1.07 0.63 0.02 0.7 232
3500 3500 23S 4 35 445   v4 G:C cWW       Strong M 11 9 7 0.7 0.73 0.98 1.72 0.97 0.98 1.12 0.68 0.08 0.68 233
3507 3507 23S 4 36 444   v4 G:C cWW       Strong M 10 10 7 0.7 0.86 0.97 1.83 0.97 0.98 0.57 0.2 0.08 0.68 233
3514 3514 23S 4 37 442   v4 C:G cWW       Strong M 20 16 14 0.78 0.9 0.95 1.85 0.95 0.99 0.27 -0.06 0.09 0.67 233
3521 3521 23S 4 38 441   v4 A:U cWW       Strong M 17 19 15 0.83 0.88 0.94 1.82 0.94 0.98 0.03 -0.24 0.09 0.67 233
3528 3528 23S 4 39 440   v4 G:C cWW       Strong M 24 33 20 0.7 0.49 0.69 1.19 0.71 0.71 -0.48 -0.62 0.08 0.54 233
3535 3535 23S 4 40 439   v4 U:A cWW       Strong M 6 7 6 0.92 0.96 0.98 1.94 0.98 1.0 -0.64 -0.64 0.04 0.15 233
3542 3542 23S 4 41 438   v4 C:G cWW       Strong M 7 5 5 0.83 0.92 0.95 1.87 0.95 1.0 -0.66 -0.62 0.07 0.14 233
3549 3549 23S 4 42 437   v4 A:U cWW       Strong M 6 5 5 0.91 1.0 1.0 2.0 1.0 1.0 -0.61 -0.55 0.08 0.13 233
3556 3556 23S 4 43 436   v4 G:C cWW       Strong M 7 6 6 0.92 0.96 0.98 1.93 0.98 0.98 -0.64 -0.58 0.08 0.14 233
3563 3563 23S 4 44 434   v4 A:U cWW       Strong M 10 9 7 0.74 0.76 0.86 1.62 0.86 0.88 -0.62 -0.61 0.07 0.14 233
3570 3570 23S 4 45 433   v4 G:C cWW       Strong M 9 9 7 0.78 0.77 0.88 1.65 0.88 0.93 -0.57 -0.59 0.07 0.14 233
3577 3577 23S 4.1 46 179   v4 G:C cWW       Strong M 9 6 5 0.67 0.27 0.41 0.68 0.33 0.33 -0.63 -0.49 0.08 0.09 233
3584 3584 23S 4.1 47 178   v4 C:G cWW       Strong M 5 1 1 0.33 0.25 0.67 0.92 0.44 1.0 -0.51 -0.26 0.08 0.03 233
3598 3598 23S 5 54 116   v4 G:C cWW       Strong M 9 7 7 0.88 1.0 1.0 2.0 1.0 1.0 -0.58 -0.54 0.02 0.1 233
3605 3605 23S 5 55 115   v4 G:C cWW       Strong M 6 3 2 0.44 0.6 0.88 1.48 0.88 0.94 -0.5 -0.48 0.03 0.11 233
3612 3612 23S 5 56 114   v4 A:U cWW       Strong M 7 6 6 0.92 0.47 0.76 1.22 0.76 0.85 -0.55 -0.54 0.02 0.11 233
3619 3619 23S 6 57 70   v4 C:G cWW       Strong M 6 5 6 1.0 0.89 0.95 1.84 0.95 0.95 -0.57 -0.58 0.0 0.12 233
3626 3626 23S 6 58 69   v4 G:C cWW       Strong M 2 4 2 0.67 0.67 0.87 1.54 0.87 0.9 -0.54 -0.51 0.0 0.12 233
3633 3633 23S 6 59 68   v4 U:G cWW       Strong M 6 6 6 1.0 0.76 0.85 1.61 0.85 0.95 -0.57 -0.6 0.0 0.12 233
3640 3640 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong M 9 6 5 0.67 0.43 0.6 1.03 0.15 0.15 -0.55 -0.5 0.02 0.06 233
3647 3647 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong M 9 6 3 0.4 0.35 0.46 0.81 0.29 0.43 -0.59 -0.53 0.02 0.09 233
3661 3661 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong M 6 4 2 0.4 0.25 0.5 0.75 0.33 0.33 -0.49 -0.46 0.01 0.06 233
3675 3675 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong M 8 6 2 0.29 0.33 0.46 0.79 0.43 0.46 -0.61 -0.62 0.0 0.12 233
3682 3682 23S 7 76 110   v4 C:G cWW       Strong M 8 5 2 0.31 0.71 0.82 1.53 0.82 0.88 -0.61 -0.55 0.02 0.11 234
3689 3689 23S 7 77 109   v4 G:C cWW       Strong M 8 7 7 0.93 0.91 0.94 1.85 0.94 1.0 -0.62 -0.57 0.02 0.11 234
3696 3696 23S 7 78 108   v4 U:G cWW       Strong M 4 5 4 0.89 0.82 0.94 1.76 0.94 0.97 -0.5 -0.47 0.02 0.11 234
3703 3703 23S 7 79 107   v4 C:G cWW       Strong M 4 5 2 0.44 0.77 0.88 1.64 0.88 1.0 -0.59 -0.55 0.02 0.11 234
3710 3710 23S 7 80 106   v4 G:C cWW       Strong M 9 7 7 0.88 0.84 0.91 1.75 0.91 1.0 -0.6 -0.56 0.02 0.11 234
3717 3717 23S 7 81 105   v4 G:C cWW       Strong M 6 2 2 0.5 0.74 0.83 1.56 0.83 0.93 -0.56 -0.57 0.0 0.09 234
3724 3724 23S 7 82 104   v4 U:A tSH       Strong M 4 2 1 0.33 0.56 0.7 1.26 0.48 0.85 -0.56 -0.45 0.01 0.09 234
3731 3731 23S 7 85 97   v4 G:C cWW       Strong M 3 2 1 0.4 0.67 0.89 1.56 0.89 0.89 -0.5 -0.43 0.02 0.09 234
3738 3738 23S 7 86 96   v4 G:C cWW       Strong M 5 4 4 0.89 0.88 0.93 1.81 0.93 0.96 -0.59 -0.52 0.02 0.09 234
3745 3745 23S 7 87 95   v4 U:A cWW       Strong M 7 4 4 0.73 0.8 0.88 1.68 0.88 0.92 -0.54 -0.48 0.02 0.08 234
3752 3752 23S 8 121 130   v4 G:C cWW       Strong M 5 6 5 0.91 0.84 0.89 1.74 0.89 0.89 -0.53 -0.53 0.01 0.09 234
3759 3759 23S 8 122 129   v4 G:C cWW       Strong M 3 5 2 0.5 0.78 0.93 1.71 0.93 0.97 -0.46 -0.45 0.01 0.09 234
3766 3766 23S 8 123 128   v4 G:C cWW       Strong M 5 6 5 0.91 0.8 0.92 1.72 0.92 0.96 -0.47 -0.43 0.01 0.08 234
3773 3773 23S 9 131 148   v4 A:U cWW       Strong M 1 1 1 1.0 0.5 0.6 1.1 0.6 0.8 -0.19 -0.15 0.01 0.02 234
3780 3780 23S 9 132 147   v4 G:C cWW       Strong M 1 1 1 1.0 0.75 0.83 1.58 0.83 0.83 -0.21 -0.17 0.01 0.02 234
3787 3787 23S 9 133 146   v4 U:A cWW       Strong M 1 1 1 1.0 0.25 0.5 0.75 0.67 0.67 -0.21 -0.16 0.01 0.02 234
3794 3794 23S 9 134 145   v4 G:C cWW       Strong M 1 1 1 1.0 0.33 0.6 0.93 0.6 0.8 -0.21 -0.14 0.01 0.02 234
3801 3801 23S 9 135 144   v4 U:A cWW       Strong M 1 1 1 1.0 0.33 0.5 0.83 0.5 0.5 -0.19 -0.12 0.01 0.01 234
3808 3808 23S 9 136 143   v4 G:C cWW       Strong M 0 0 0 0.0 0.0 0.0 0.0 0.5 1.0 -0.1 -0.06 0.01 0.01 234
3815 3815 23S 9 137 142   v4 U:A cWW       Strong M 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.07 -0.06 0.0 0.0 234
3822 3822 23S 10 150 176   v4 U:A cWW       Strong M 0 1 0 0.0 0.83 0.92 1.76 0.92 0.92 -0.29 -0.3 0.0 0.04 234
3829 3829 23S 10 151 175   v4 C:G cWW       Strong M 1 1 1 1.0 0.86 0.93 1.79 0.93 0.93 -0.3 -0.29 0.0 0.04 234
3836 3836 23S 10 152 174   v4 A:U cWW       Strong M 0 0 0 0.0 0.86 0.92 1.78 0.92 1.0 -0.28 -0.27 0.0 0.04 234
3843 3843 23S 10 153 173   v4 U:A cWW       Strong M 0 0 0 0.0 1.0 1.0 2.0 1.0 1.0 -0.23 -0.23 0.0 0.04 234
3850 3850 23S 10 154 172   v4 U:A cWW       Strong M 0 0 0 0.0 0.5 0.89 1.39 0.89 0.89 -0.19 -0.2 0.0 0.03 234
3857 3857 23S 10 155 171   v4 A:U cWW       Strong M 0 1 0 0.0 0.2 0.0 0.2 0.44 0.89 -0.21 -0.19 0.0 0.03 234
3864 3864 23S 10 156 170   v4 A:U cWW       Strong M 0 0 0 0.0 0.5 0.78 1.28 0.22 0.22 -0.22 -0.21 0.0 0.03 234
3871 3871 23S 10 157 169   v4 C:G cWW       Strong M 1 1 1 1.0 0.5 0.83 1.33 0.0 0.17 -0.16 -0.14 0.0 0.02 234
3885 3885 23S 11 183 214   v4 C:G cWW       Strong M 6 3 0 0.0 0.62 0.91 1.54 0.91 0.94 -0.49 -0.52 0.0 0.11 250
3892 3892 23S 11 184 212   v4 C:G cWW       Strong M 10 9 6 0.63 0.59 0.79 1.38 0.79 0.91 -0.62 -0.62 0.01 0.14 250
3899 3899 23S 11 185 211   v4 G:C cWW       Strong M 7 7 7 1.0 0.92 0.95 1.87 0.95 0.95 -0.6 -0.63 0.01 0.14 250
3906 3906 23S 11 186 210   v4 G:C cWW       Strong M 10 8 8 0.89 0.95 0.98 1.93 0.98 0.98 -0.6 -0.61 0.0 0.14 250
3913 3913 23S 11 187 209   v4 G:C cWW       Strong M 7 6 8 1.0 1.0 1.0 2.0 1.0 1.0 -0.6 -0.65 0.01 0.14 250
3920 3920 23S 11 188 208   v4 G:C cWW       Strong M 10 11 6 0.57 0.78 0.88 1.67 0.88 1.0 -0.63 -0.74 0.02 0.14 250
3927 3927 23S 11 194 201   v4 G:C cWW       Strong M 11 7 8 0.89 0.85 0.96 1.81 0.96 0.97 0.48 0.61 0.0 0.76 254
3934 3934 23S 11 195 200   v4 A:U tSH       Strong M 4 5 3 0.67 0.62 0.97 1.6 0.97 0.97 1.28 1.15 0.0 0.76 254
3941 3941 23S 12 224 231   v4 U:A cWW       Strong M 5 1 4 1.0 0.29 0.89 1.18 0.89 0.89 -0.46 -0.44 0.01 0.14 254
3948 3948 23S 12 225 230   v4 C:G cWW       Strong M 3 3 4 1.0 0.5 0.93 1.43 0.93 0.96 -0.45 -0.47 0.01 0.14 254
3955 3955 23S 12.1 234 430   v4 U:A tWW       Strong M 3 5 1 0.25 0.53 0.79 1.32 0.79 0.81 -0.63 -0.53 0.04 0.14 254
3962 3962 23S 13 235 262   v4 U:A cWW       Strong M 16 6 5 0.46 0.23 0.66 0.89 0.66 0.68 -0.74 -0.55 0.28 0.16 254
3969 3969 23S 13 236 261   v4 C:G cWW       Strong M 27 26 12 0.45 0.43 0.65 1.09 0.65 0.71 -0.27 -0.49 0.08 0.6 254
3976 3976 23S 13 237 260   v4 C:G cWW       Strong M 25 24 9 0.37 0.49 0.64 1.13 0.64 0.67 -0.18 -0.37 0.01 0.7 254
3983 3983 23S 13 238 259   v4 C:G cWW       Strong M 29 20 11 0.45 0.41 0.6 1.01 0.72 0.73 -0.29 -0.37 0.02 0.72 254
3997 3997 23S 13 245 253   v4 G:C cWW       Strong M 13 15 10 0.71 0.82 0.93 1.74 0.93 0.94 0.07 0.09 0.0 0.77 254
4004 4004 23S 13 246 252   v4 C:G cWW       Strong M 16 15 10 0.65 0.78 0.89 1.67 0.89 0.97 -0.07 -0.1 0.0 0.77 254
4011 4011 23S 14 265 427   v4 A:U tSS       Strong M 6 5 4 0.73 0.67 0.93 1.59 0.93 0.97 -0.46 -0.45 0.01 0.13 254
4018 4018 23S 14 266 426   v4 G:C cWW       Strong M 6 6 6 1.0 0.88 0.97 1.85 0.97 0.97 -0.47 -0.45 0.01 0.13 254
4025 4025 23S 14 267 425   v4 C:G cWW       Strong M 9 8 7 0.82 0.88 0.93 1.8 0.93 0.93 -0.58 -0.59 0.0 0.13 254
4032 4032 23S 14 268 424   v4 C:G cWW       Strong M 9 8 7 0.82 0.61 0.82 1.44 0.82 0.85 -0.56 -0.54 0.0 0.13 254
4039 4039 23S 16 271 366   v4 G:C cWW       Strong M 0 1 0 0.0 0.5 0.83 1.33 0.83 0.83 -0.22 -0.22 0.0 0.02 254
4046 4046 23S 16 272 365   v4 A:U cWW       Strong M 1 1 0 0.0 0.5 0.71 1.21 0.14 0.29 -0.23 -0.27 0.01 0.02 254
4053 4053 23S 16 273 364   v4 G:C cWW       Strong M 1 1 0 0.0 0.2 0.0 0.2 0.25 0.75 -0.23 -0.28 0.01 0.03 254
4074 4074 23S 18 282 358   v4 A:U cWW       Strong M 3 2 1 0.4 0.3 0.5 0.8 0.29 0.36 -0.33 -0.35 0.0 0.04 254
4081 4081 23S 18 283 357   v4 G:C cWW       Strong M 2 3 1 0.4 0.08 0.0 0.08 0.25 0.5 -0.37 -0.35 0.0 0.05 254
4130 4130 23S 18 290 350   v4 U:G cWW       Strong M 3 4 2 0.57 0.54 0.67 1.21 0.67 0.72 -0.41 -0.38 0.01 0.06 254
4137 4137 23S 18 291 349   v4 G:U cWW       Strong M 5 5 3 0.6 0.5 0.63 1.13 0.63 0.74 -0.43 -0.4 0.01 0.06 254
4144 4144 23S 18 292 348   v4 U:A cWW       Strong M 5 3 2 0.5 0.43 0.56 0.98 0.56 0.61 -0.43 -0.36 0.02 0.06 254

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");