Base-pair collective (covariation) scores

425 rows where group_code = "M", molecule = "16S" and strength = "Strong" sorted by position_1

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conformation 6

strength 1

  • Strong · 425 ✖

molecule 1

  • 16S · 425 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
7 7 16S 1 9 25   v4 G:C cWW       Strong M 14 18 9 0.56 0.69 0.95 1.65 0.95 0.96 1.3 1.28 0.0 0.57 662
14 14 16S 1 10 24   v4 A:U cWW       Strong M 13 10 3 0.26 0.78 0.96 1.74 0.96 0.98 1.26 1.26 0.0 0.57 663
21 21 16S 1 11 23   v4 G:C cWW       Strong M 15 12 9 0.67 0.26 0.77 1.03 0.77 0.78 0.91 1.45 0.0 0.57 666
28 28 16S 1 12 22   v4 U:G cWW       Strong M 23 18 3 0.15 0.75 0.91 1.66 0.07 0.69 0.97 0.99 0.0 0.57 669
42 42 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong M 10 10 6 0.6 0.38 0.98 1.36 0.98 0.99 1.82 1.83 0.0 0.58 672
49 49 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong M 16 17 10 0.61 0.86 0.99 1.85 0.99 0.99 1.39 1.35 0.0 0.58 675
56 56 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong M 12 13 5 0.4 0.75 0.98 1.73 0.98 0.98 1.46 1.52 0.0 0.58 676
63 63 16S 3 27 556   v4 G:C cWW       Strong M 34 66 18 0.36 0.71 0.8 1.51 0.8 0.81 0.2 0.04 0.01 0.6 708
70 70 16S 3 28 555   v4 A:U cWW       Strong M 39 68 23 0.43 0.61 0.78 1.39 0.78 0.83 0.36 0.21 0.0 0.61 709
77 77 16S 3 29 554   v4 U:A cWW       Strong M 57 76 20 0.3 0.46 0.71 1.17 0.71 0.77 0.32 0.25 0.0 0.61 708
84 84 16S 3 30 553   v4 U:A cWW       Strong M 39 45 27 0.64 0.93 0.96 1.89 0.96 0.98 0.52 0.58 0.0 0.61 711
91 91 16S 3 32 552   v4 A:U cWW       Strong M 10 14 7 0.58 0.89 0.98 1.87 0.98 0.98 1.27 1.33 0.0 0.61 712
98 98 16S 3 33 551   v4 A:U cWW       Strong M 8 12 6 0.6 0.94 0.98 1.92 0.98 0.99 0.55 0.62 0.0 0.6 712
105 105 16S 3 34 550   v4 C:G cWW       Strong M 45 42 23 0.53 0.74 0.93 1.66 0.93 0.96 0.76 0.91 0.0 0.61 714
119 119 16S 3 36 548   v4 C:G cWW       Strong M 41 44 24 0.56 0.84 0.93 1.78 0.93 0.98 0.94 0.91 0.0 0.63 736
140 140 16S 4 40 402   v4 C:G cWW       Strong M 54 53 31 0.58 0.83 0.93 1.76 0.93 0.94 0.5 0.51 0.0 0.64 749
147 147 16S 4 41 401   v4 G:C cWW       Strong M 48 48 35 0.73 0.87 0.94 1.81 0.94 0.96 0.47 0.45 0.0 0.65 750
154 154 16S 4 42 400   v4 G:C cWW       Strong M 37 42 30 0.76 0.94 0.97 1.91 0.97 0.99 0.1 0.1 0.0 0.65 758
161 161 16S 4 43 399   v4 C:G cWW       Strong M 58 64 43 0.7 0.82 0.93 1.75 0.93 0.97 0.65 0.59 0.0 0.65 759
168 168 16S 4 44 398   v4 A:U cWW       Strong M 45 53 27 0.55 0.84 0.94 1.77 0.94 0.94 0.48 0.47 0.0 0.65 760
175 175 16S 4 45 396   v4 G:C cWW       Strong M 73 84 48 0.61 0.72 0.86 1.58 0.86 0.92 0.52 0.52 0.0 0.66 763
182 182 16S 4 46 395   v4 G:C cWW       Strong M 58 69 38 0.6 0.64 0.87 1.51 0.87 0.92 0.92 0.96 0.0 0.66 768
189 189 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong M 72 41 13 0.23 0.1 0.0 0.1 0.32 0.33 0.35 0.71 0.0 0.66 773
196 196 16S 5 52 359   v4 C:G cWW       Strong M 28 31 22 0.75 0.94 0.98 1.92 0.98 0.99 1.02 1.04 0.0 0.68 789
203 203 16S 5 53 358   v4 A:U cWW       Strong M 3 4 1 0.29 0.08 0.0 0.08 0.98 0.99 1.81 1.89 0.0 0.68 792
224 224 16S 5 57 355   v4 G:C cWW       Strong M 3 5 2 0.5 0.27 0.99 1.25 0.99 0.99 1.83 1.84 0.0 0.7 824
238 238 16S 6 61 106   v4 G:C cWW       Strong M 12 17 9 0.62 0.84 0.97 1.81 0.97 0.99 1.27 1.18 0.01 0.7 828
252 252 16S 6 63 104   v4 C:G cWW       Strong M 14 12 10 0.77 0.03 0.0 0.03 0.11 0.11 -0.4 -0.51 0.0 0.0 867
259 259 16S 6 66 103   v4 A:U cWW       Strong M 9 7 7 0.88 0.01 0.0 0.01 0.11 0.12 -0.37 -0.38 0.0 0.0 830
266 266 16S 6 67 102   v4 C:G cWW       Strong M 10 8 7 0.78 0.03 0.0 0.03 0.11 0.12 -0.42 -0.42 0.0 0.0 830
280 280 16S 6 69 99   v4 G:C cWW       Strong M 13 3 3 0.38 0.04 0.0 0.04 0.05 0.05 -0.41 -0.4 0.0 0.0 830
287 287 16S 6 70 98   v4 U:A cWW       Strong M 10 6 4 0.5 0.03 0.0 0.03 0.04 0.04 -0.4 -0.41 0.0 0.0 830
294 294 16S 6 73 97   v4 C:G cWW       Strong M 4 5 0 0.0 0.04 0.0 0.04 0.08 0.08 -0.36 -0.39 0.0 0.0 830
301 301 16S 6 74 96   v4 A:U cWW       Strong M 6 4 2 0.4 0.01 0.0 0.01 0.04 0.07 -0.32 -0.41 0.0 0.0 830
308 308 16S 6 75 95   v4 G:C cWW       Strong M 2 7 0 0.0 0.0 0.0 0.0 0.04 0.06 -0.32 -0.39 0.0 0.0 830
315 315 16S 6 76 93   v4 G:U cWW       Strong M 1 2 1 0.67 0.03 0.0 0.03 0.06 0.06 -0.36 -0.37 0.0 0.0 830
322 322 16S 6 77 92   v4 A:U cWW       Strong M 1 2 0 0.0 0.02 0.0 0.02 0.04 0.07 -0.31 -0.37 0.0 0.0 830
329 329 16S 6 78 91   v4 A:U cWW       Strong M 2 1 0 0.0 0.02 0.0 0.02 0.04 0.06 -0.31 -0.35 0.0 0.0 830
336 336 16S 6 79 90   v4 G:C cWW       Strong M 2 1 1 0.67 0.02 0.0 0.02 0.04 0.04 -0.29 -0.31 0.0 0.0 830
343 343 16S 6 80 89   v4 A:U cWW       Strong M 1 1 0 0.0 0.01 0.0 0.01 0.01 0.01 -0.25 -0.21 0.0 0.0 830
350 350 16S 6 81 88   v4 A:U cWW       Strong M 2 2 0 0.0 0.01 0.0 0.01 0.01 0.01 -0.21 -0.23 0.0 0.0 830
357 357 16S 6 82 87   v4 G:C cWW       Strong M 3 2 1 0.4 0.01 0.0 0.01 0.01 0.01 -0.22 -0.21 0.0 0.0 830
364 364 16S 6.1 113 314   v4 G:C cWW       Strong M 1 1 0 0.0 0.54 0.99 1.53 0.99 0.99 1.64 1.6 0.01 0.69 830
371 371 16S 6.1 114 313   v4 U:A cWW       Strong M 4 3 3 0.86 0.29 0.98 1.27 0.98 0.98 1.67 1.6 0.01 0.7 830
378 378 16S 6.1 115 312   v4 G:C cWW       Strong M 2 1 0 0.0 0.25 0.98 1.23 0.98 0.98 1.69 1.58 0.01 0.7 830
385 385 16S 7 122 239   v4 G:U cWW       Strong M 27 41 14 0.41 0.49 0.87 1.36 0.87 0.95 0.85 0.66 0.0 0.68 829
392 392 16S 7 123 238   v4 U:A cWW       Strong M 23 23 18 0.78 0.68 0.96 1.64 0.96 0.97 1.08 1.0 0.0 0.68 830
399 399 16S 7 124 237   v4 C:G cWW       Strong M 18 17 9 0.51 0.63 0.95 1.58 0.95 0.96 0.92 0.95 0.0 0.68 830
406 406 16S 7 125 236   v4 U:A cWW       Strong M 20 23 12 0.56 0.54 0.93 1.47 0.92 0.96 0.88 1.0 0.0 0.68 831
413 413 16S 7 126 235   v4 G:C cWW       Strong M 52 41 10 0.21 0.42 0.85 1.27 0.85 0.9 0.55 0.78 0.01 0.67 831
420 420 16S 7 127 234   v4 G:C cWW       Strong M 83 56 13 0.19 0.3 0.61 0.9 0.61 0.69 0.02 0.28 0.01 0.66 831
427 427 16S 7 128 233   v4 G:C cWW       Strong M 94 65 15 0.19 0.2 0.0 0.2 0.45 0.48 -0.14 -0.28 0.04 0.62 831
434 434 16S 7 129 232   v4 A:G cWW   3°: base pair   Strong M 68 101 11 0.13 0.14 0.0 0.14 0.26 0.28 0.3 -0.49 0.04 0.61 832
441 441 16S 7 131 231   v4 A:U cWW       Strong M 99 101 28 0.28 0.58 0.68 1.25 0.68 0.73 -0.33 -0.31 0.0 0.66 829
448 448 16S 7 132 230   v4 C:G cWW       Strong M 68 59 35 0.55 0.84 0.91 1.75 0.91 0.94 0.26 0.29 0.0 0.66 831
455 455 16S 7 136 227   v4 C:G cWW       Strong M 3 51 2 0.07 0.01 0.0 0.01 0.11 0.11 -0.33 0.48 0.0 0.0 832
462 462 16S 7 137 226   v4 U:G cWW       Strong M 12 64 10 0.26 0.04 0.0 0.04 0.08 0.1 -0.44 -0.83 0.0 0.0 832
469 469 16S 7 138 225   v4 G:C cWW       Strong M 9 15 9 0.75 0.06 0.0 0.06 0.11 0.11 -0.43 -0.48 0.0 0.0 832
476 476 16S 7 139 224   v4 A:U cWW       Strong M 10 11 7 0.67 0.03 0.0 0.03 0.1 0.11 -0.41 -0.35 0.0 0.0 832
483 483 16S 7 140 223   v4 U:A cWW       Strong M 11 11 7 0.64 0.05 0.0 0.05 0.1 0.11 -0.47 -0.4 0.0 0.0 832
490 490 16S 7 141 222   v4 G:C cWW       Strong M 10 9 7 0.74 0.03 0.0 0.03 0.11 0.11 -0.41 -0.35 0.0 0.0 831
497 497 16S 7 142 221   v4 G:C cWW       Strong M 8 10 8 0.89 0.03 0.0 0.03 0.1 0.11 -0.41 -0.37 0.0 0.0 832
504 504 16S 8 144 178   v4 G:C cWW       Strong M 10 6 3 0.38 0.05 0.0 0.05 0.1 0.1 -0.45 -0.43 0.0 0.0 832
511 511 16S 8 145 177   v4 G:G cWW   3°: base pair   Strong M 9 12 6 0.57 0.04 0.0 0.04 0.1 0.1 -0.45 -0.42 0.0 0.0 832
518 518 16S 8 146 176   v4 G:C cWW       Strong M 10 11 6 0.57 0.04 0.0 0.04 0.07 0.1 -0.43 -0.46 0.0 0.0 832
525 525 16S 8 147 175   v4 G:C cWW       Strong M 8 9 3 0.35 0.02 0.0 0.02 0.1 0.1 -0.38 -0.4 0.0 0.0 832
532 532 16S 8 152 169   v4 A:C tHW   3°: base pair   Strong M 1 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.13 -0.07 0.0 0.0 832
539 539 16S 8 153 168   v4 C:G cWW       Strong M 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.07 -0.04 0.0 0.0 832
546 546 16S 8 154 167   v4 U:A cWW       Strong M 0 1 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.06 -0.05 0.0 0.0 832
553 553 16S 8 155 166   v4 A:U cWW       Strong M 1 2 1 0.67 0.0 0.0 0.0 0.01 0.01 -0.09 -0.09 0.0 0.0 832
560 560 16S 8 156 165   v4 C:G cWW       Strong M 1 2 1 0.67 0.0 0.0 0.0 0.01 0.01 -0.1 -0.11 0.0 0.0 832
567 567 16S 8 157 164   v4 U:G cWW       Strong M 3 3 3 1.0 0.01 0.0 0.01 0.02 0.02 -0.14 -0.14 0.0 0.0 832
574 574 16S 8 158 163   v4 G:C cWW       Strong M 5 5 2 0.4 0.01 0.0 0.01 0.02 0.02 -0.25 -0.25 0.0 0.0 832
581 581 16S 9 184 193   v4 G:C cWW       Strong M 5 9 2 0.29 0.03 0.0 0.03 0.08 0.08 -0.45 -0.43 0.0 0.0 832
588 588 16S 9 185 192   v4 U:A cWW       Strong M 7 9 5 0.62 0.06 0.0 0.06 0.09 0.09 -0.45 -0.48 0.0 0.0 832
595 595 16S 9 186 191   v4 C:G cWW       Strong M 9 9 5 0.56 0.04 0.0 0.04 0.08 0.09 -0.44 -0.46 0.0 0.0 832
602 602 16S 10 198 219   v4 G:U cWW       Strong M 2 0 0 0.0 0.0 0.0 0.0 0.02 0.02 -0.19 -0.15 0.0 0.0 832
609 609 16S 10 199 218   v4 A:U cWW       Strong M 1 1 1 1.0 0.0 0.0 0.0 0.01 0.01 -0.17 -0.17 0.0 0.0 832
616 616 16S 10 200 217   v4 G:C cWW       Strong M 2 2 2 1.0 0.0 0.0 0.0 0.01 0.03 -0.19 -0.17 0.0 0.0 832
623 623 16S 10 201 216   v4 G:U cWW       Strong M 3 2 2 0.8 0.01 0.0 0.01 0.0 0.01 -0.18 -0.17 0.0 0.0 832
630 630 16S 10 202 215   v4 G:C cWW       Strong M 1 0 0 0.0 0.0 0.0 0.0 0.01 0.01 -0.15 -0.1 0.0 0.0 832
637 637 16S 10 203 214   v4 G:C cWW       Strong M 1 2 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.14 -0.1 0.0 0.0 832
644 644 16S 10 206 213   v4 C:G cWW       Strong M 4 2 2 0.67 0.01 0.0 0.01 0.01 0.01 -0.14 -0.12 0.0 0.0 832
651 651 16S 10 207 212   v4 C:G cWW       Strong M 3 4 2 0.57 0.01 0.0 0.01 0.01 0.01 -0.13 -0.14 0.0 0.0 832
658 658 16S 11 240 286   v4 G:C cWW       Strong M 17 16 13 0.79 0.95 0.99 1.94 0.99 1.0 0.78 0.76 0.0 0.68 832
665 665 16S 11 241 285   v4 G:C cWW       Strong M 27 33 22 0.73 0.71 0.97 1.68 0.97 1.0 1.19 1.11 0.0 0.68 832
672 672 16S 11 242 284   v4 G:C cWW       Strong M 64 65 32 0.5 0.64 0.81 1.45 0.81 0.99 0.44 0.33 0.0 0.68 832
679 679 16S 11 245 283   v4 U:U cWW   3°: base pair   Strong M 16 8 3 0.25 0.61 0.94 1.56 0.01 0.03 0.91 1.06 0.0 0.68 830
686 686 16S 11 247 277   v4 G:C cWW       Strong M 10 10 7 0.7 0.97 0.99 1.96 0.99 0.99 0.64 0.66 0.0 0.68 832
693 693 16S 11 248 276   v4 C:G cWW       Strong M 9 10 9 0.95 0.85 1.0 1.84 1.0 1.0 1.48 1.49 0.0 0.68 832
700 700 16S 11 249 275   v4 U:G cWW       Strong M 28 12 4 0.2 0.03 0.0 0.03 0.81 0.98 0.88 1.48 0.0 0.68 831
707 707 16S 11 252 274   v4 U:A cWW       Strong M 41 44 23 0.54 0.78 0.91 1.7 0.91 0.93 0.3 0.3 0.0 0.67 831
714 714 16S 11 253 273   v4 A:U cWW       Strong M 17 15 11 0.69 0.94 0.98 1.92 0.98 0.98 -0.21 -0.21 0.01 0.57 840
721 721 16S 11 254 272   v4 G:C cWW       Strong M 27 27 17 0.63 0.88 0.93 1.81 0.93 0.94 -0.9 -0.84 0.14 0.29 853
728 728 16S 11 255 271   v4 G:C cWW       Strong M 11 13 6 0.5 0.64 0.78 1.41 0.78 0.97 -0.57 -0.57 0.13 0.12 859
735 735 16S 11 256 270   v4 U:A cWW       Strong M 8 5 2 0.31 0.05 0.0 0.05 0.12 0.12 -0.47 -0.42 0.0 0.0 859
742 742 16S 11 257 269   v4 G:C cWW       Strong M 9 4 4 0.61 0.04 0.0 0.04 0.1 0.1 -0.47 -0.41 0.0 0.0 859
749 749 16S 11 258 268   v4 G:U cWW       Strong M 12 10 9 0.82 0.03 0.0 0.03 0.1 0.1 -0.44 -0.39 0.0 0.0 859
756 756 16S 11 259 267   v4 G:C cWW       Strong M 7 8 7 0.93 0.03 0.0 0.03 0.1 0.1 -0.4 -0.36 0.0 0.0 859
763 763 16S 12 289 311   v4 G:C cWW       Strong M 6 9 4 0.53 0.56 0.99 1.55 0.99 0.99 1.47 1.48 0.01 0.68 832

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");