Base-pair collective (covariation) scores

61 rows where group_code = "E", molecule = "23S" and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, WCGU, DfDel, PNuc, Seq

conformation 3

strength 1

  • Weak · 61 ✖

molecule 1

  • 23S · 61 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3401 3401 23S 1 8 2895   v4 C:G cWW       Weak E 6 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.91 -0.43 0.01 0.0 41
3667 3667 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak E 7 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.25 -0.05 0.45 0.0 118
3877 3877 23S 10 158 168   v4 U:G cWW       Weak E 5 6 3 0.55 0.56 0.93 1.5 0.93 0.94 0.53 0.68 0.0 0.4 120
4059 4059 23S 16 274 363   v4 C:G cWW       Weak E 15 8 2 0.17 0.31 0.51 0.82 0.37 0.39 -0.64 -0.88 0.13 0.41 204
4066 4066 23S 18 281 359   v4 C:G cWW       Weak E 6 17 1 0.09 0.34 0.57 0.91 0.51 0.55 -0.73 -0.56 0.35 0.2 204
4087 4087 23S 18 284 356   v4 U:G cWW       Weak E 17 19 6 0.33 0.29 0.42 0.7 0.34 0.53 -0.71 -0.44 0.06 0.54 204
4150 4150 23S 18 293 347   v4 U:A cWW       Weak E 19 23 11 0.52 0.34 0.55 0.88 0.53 0.56 -0.54 -0.18 0.06 0.65 220
4248 4248 23S 20 327 335   v4 G:C cWW       Weak E 2 1 1 0.67 0.89 0.99 1.88 0.99 0.99 1.48 1.53 0.0 0.83 220
4276 4276 23S 21 378 396   v4 C:G cWW       Weak E 7 5 1 0.17 0.04 0.0 0.04 0.23 0.99 1.22 1.71 0.0 0.84 221
4304 4304 23S 21 382 392   v4 A:U cWW       Weak E 1 2 0 0.0 0.0 0.0 0.0 0.0 0.01 1.93 1.87 0.0 0.84 221
4465 4465 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak E 11 11 2 0.18 0.43 0.67 1.1 0.55 0.93 0.13 0.14 0.02 0.71 207
4521 4521 23S 25.1 564 577   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.79 207
4661 4661 23S 27 600 657   v4 G:U cWW       Weak E 1 5 1 0.33 0.06 0.0 0.06 0.85 1.0 1.85 1.34 0.0 0.76 201
4759 4759 23S 31 641 647   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 203
4766 4766 23S 32 671 809   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.78 204
4829 4829 23S 33 687 775   v4 C:G No BP       Weak E 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 1.95 0.0 0.78 205
4885 4885 23S 33 695 767   v4 G:U cWW       Weak E 2 5 1 0.29 0.14 0.0 0.14 0.06 0.99 1.91 1.61 0.0 0.78 205
4934 4934 23S 34 703 729   v4 U:G No BP       Weak E 16 0 0 0.0 0.01 0.0 0.01 0.49 0.99 1.0 1.96 0.0 0.78 205
4941 4941 23S 34 707 724   v4 G:U cWW       Weak E 1 1 0 0.0 0.0 0.0 0.0 0.01 0.99 1.86 1.96 0.01 0.77 205
5137 5137 23S 37 826 831   v4 U:G cWW       Weak E 5 1 0 0.0 0.02 0.0 0.02 0.76 0.99 1.16 1.91 0.0 0.81 213
5711 5711 23S 42 1051 1108   v4 G:U cWW       Weak E 2 1 1 0.67 0.33 0.99 1.32 0.99 0.99 1.8 1.9 0.0 0.78 205
5956 5956 23S 46 1215 1234   v4 G:U cWW       Weak E 2 1 0 0.0 0.78 0.96 1.74 0.02 0.83 1.19 1.31 0.0 0.73 192
6418 6418 23S 54 1415 1587   v4 U:G cWW       Weak E 8 4 1 0.17 0.5 0.63 1.13 0.34 0.49 0.09 -0.06 0.0 0.63 177
6516 6516 23S 56 1436 1556   v4 G:C cWW       Weak E 11 11 4 0.36 0.54 0.84 1.38 0.84 0.93 0.95 0.78 0.0 0.68 178
6530 6530 23S 56 1440 1551   v4 U:A cWW       Weak E 19 8 2 0.15 0.71 0.82 1.52 0.82 0.97 -0.79 -0.64 0.02 0.14 179
6565 6565 23S 57 1445 1466   v4 G:U cWW       Weak E 7 6 3 0.46 0.29 0.79 1.08 0.05 0.76 1.29 0.81 0.0 0.68 180
6614 6614 23S 58 1468 1524   v4 U:G cWW       Weak E 13 8 0 0.0 0.21 0.5 0.71 0.1 0.2 0.5 0.39 0.02 0.65 180
6649 6649 23S 58 1478 1513   v4 G:U cWW       Weak E 7 10 2 0.23 0.58 0.69 1.28 0.53 0.55 -0.43 -0.48 0.01 0.58 180
6670 6670 23S 58 1481 1510   v4 U:G cWW       Weak E 4 9 1 0.15 0.61 0.78 1.39 0.78 0.86 -0.27 -0.08 0.01 0.61 179
6684 6684 23S 58 1483 1506   v4 G:U cWW       Weak E 8 9 3 0.35 0.69 0.87 1.56 0.87 0.97 0.18 0.35 0.01 0.66 180
6992 6992 23S 63 1707 1751   v4 G:U cWW       Weak E 1 3 0 0.0 0.0 0.0 0.0 0.03 1.0 1.9 1.79 0.0 0.59 155
7132 7132 23S 64 1770 1982   v4 G:U cWW       Weak E 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.94 1.94 0.0 0.59 155
7153 7153 23S 65 1775 1789   v4 U:A tHS       Weak E 0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.83 0.0 0.59 156
7230 7230 23S 66 1799 1820   v4 G:U No BP       Weak E 0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.78 0.0 0.58 155
7244 7244 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak E 4 5 1 0.22 0.42 0.95 1.37 0.07 0.99 1.37 1.3 0.0 0.57 156
7300 7300 23S 68 1835 1905   v4 G:C cWW       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.94 0.0 0.59 155
7328 7328 23S 68 1841 1901   v4 U:A cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.59 155
7335 7335 23S 68 1842 1898   v4 G:U cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.94 2.0 0.0 0.59 155
7384 7384 23S 68 1851 1891   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59 155
7475 7475 23S 69 1907 1923   v4 G:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59 155
7503 7503 23S 69 1911 1919   v4 U:A No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.59 155
7524 7524 23S 71 1945 1961   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.93 0.0 0.59 155
7538 7538 23S 71 1947 1959   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.93 0.0 0.59 155
7678 7678 23S 73 2056 2612   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.51 135
7699 7699 23S 74 2065 2445   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 1.87 0.0 0.54 144
7762 7762 23S 74 2075 2434   v4 U:A No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.98 0.98 2.0 1.86 0.0 0.59 155
7769 7769 23S 75 2077 2243   v4 A:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 2.0 0.0 0.59 155
7895 7895 23S 76 2100 2189   v4 G:U cWW       Weak E 5 6 1 0.18 0.09 0.0 0.09 0.29 0.99 1.17 1.24 0.0 0.59 155
7958 7958 23S 76 2109 2180   v4 U:U cWW   3°: base pair   Weak E 1 1 1 1.0 1.0 1.0 2.0 0.97 1.0 1.7 1.77 0.0 0.59 155
7993 7993 23S 77 2120 2178   v4 G:C cWW       Weak E 8 4 2 0.33 0.41 0.8 1.21 0.8 1.0 0.92 1.23 0.0 0.59 155
8049 8049 23S 78 2136 2155   v4 G:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.04 -0.15 0.01 0.0 155
8098 8098 23S 78 2143 2148   v4 C:G cWW       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 -0.04 -0.29 0.03 0.0 155
8196 8196 23S 80 2249 2255   v4 U:G No BP       Weak E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.98 1.86 2.0 0.0 0.59 155
8280 8280 23S 83 2291 2341   v4 U:G cWW       Weak E 6 8 4 0.57 0.26 0.54 0.79 0.61 0.98 0.49 0.76 0.0 0.59 155
8392 8392 23S 85.1 2328 2387   v4 A:U cWW   3°: pseudoknot   Weak E 0 1 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.76 0.0 0.59 155
8441 8441 23S 86 2351 2366   v4 G:A cWW   3°: base pair   Weak E 5 8 4 0.61 0.22 0.77 0.98 0.27 0.3 1.3 0.83 0.0 0.59 155
8567 8567 23S 89 2455 2496   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.53 138
8595 8595 23S 89 2460 2490   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.92 0.0 0.52 138
8854 8854 23S 93 2592 2601   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.86 0.01 0.52 139
9008 9008 23S 95 2652 2668   v4 C:G cWW       Weak E 7 8 1 0.13 0.1 0.0 0.1 0.31 0.36 0.62 0.72 0.0 0.53 139
9113 9113 23S 96 2696 2711   v4 U:A cWW       Weak E 6 10 3 0.38 0.13 0.0 0.13 0.37 0.81 1.2 0.59 0.0 0.53 139

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");