Base-pair collective (covariation) scores

47 rows where group_code = "E", molecule = "16S" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, DfDel, PNuc

conformation 4

strength 1

  • Weak · 47 ✖

molecule 1

  • 16S · 47 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
34 34 16S 1 13 21   v4 U:G No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.9 1.97 0.01 0.77 815
111 111 16S 3 35 549   v4 G:C cWW       Weak E 2 5 1 0.29 0.03 0.0 0.03 0.92 0.99 1.84 1.58 0.01 0.85 904
125 125 16S 3 37 547   v4 U:A tWS       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.99 1.0 1.9 1.91 0.01 0.86 912
132 132 16S 4 39 403   v4 G:C cWW       Weak E 6 10 1 0.12 0.05 0.0 0.05 0.07 0.08 1.54 1.69 0.01 0.86 919
209 209 16S 5 54 357   v4 C:G cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.98 0.0 0.9 946
216 216 16S 5 56 356   v4 U:A cWW       Weak E 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 958
230 230 16S 5 58 354   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.99 0.0 0.91 960
244 244 16S 6 62 105   v4 U:G cWW       Weak E 5 6 0 0.0 0.0 0.0 0.0 0.0 0.0 1.72 -0.01 0.0 0.0 965
272 272 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak E 8 6 3 0.43 0.61 0.97 1.58 0.97 0.98 1.63 1.6 0.0 0.92 973
783 783 16S 12 292 308   v4 G:C cWW       Weak E 15 8 1 0.09 0.03 0.0 0.03 0.44 0.95 0.87 1.76 0.0 0.97 1025
881 881 16S 14 342 347   v4 C:G cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.99 2.0 0.0 0.97 1018
916 916 16S 15 375 388   v4 U:G No BP       Weak E 1 1 1 1.0 0.12 0.0 0.12 0.0 1.0 1.93 1.84 0.01 0.96 1026
951 951 16S 16 406 436   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.02 0.0 0.0 0.0 1030
979 979 16S 16 416 427   v4 G:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1030
1000 1000 16S 16 419 424   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1030
1259 1259 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.99 1.97 0.0 0.96 1015
1308 1308 16S 20 584 757   v4 G:U cWW       Weak E 0 3 0 0.0 0.0 0.0 0.0 0.0 0.98 2.0 1.83 0.0 0.98 1033
1371 1371 16S 21 594 645   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
1385 1385 16S 21 597 643   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
1441 1441 16S 21 605 633   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
1448 1448 16S 21 606 632   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
1525 1525 16S 22 658 748   v4 C:G cWW       Weak E 10 15 1 0.08 0.28 0.87 1.16 0.84 0.89 1.21 1.3 0.0 0.97 1028
1567 1567 16S 22 666 740   v4 G:U cWW       Weak E 1 7 0 0.0 0.08 0.0 0.08 0.01 0.08 1.9 1.46 0.0 0.97 1028
1630 1630 16S 23 677 713   v4 U:G cWW       Weak E 10 8 3 0.33 0.06 0.0 0.06 0.84 0.92 1.62 1.47 0.0 0.98 1029
1679 1679 16S 23 684 706   v4 U:A cWW       Weak E 5 7 3 0.5 0.01 0.0 0.01 0.31 1.0 1.85 1.09 0.0 0.97 1028
1700 1700 16S 23 690 697   v4 G:U tSH       Weak E 2 3 0 0.0 0.0 0.0 0.0 0.01 0.99 1.96 1.89 0.0 0.98 1032
1875 1875 16S 26 832 854   v4 G:U cWW       Weak E 14 16 7 0.47 0.15 0.0 0.15 0.02 0.07 1.34 0.56 0.0 0.98 1040
1938 1938 16S 26.1 861 868   v4 G:C cWW       Weak E 5 5 1 0.2 0.48 0.97 1.46 0.96 0.98 1.76 1.71 0.0 0.97 1019
2029 2029 16S 28 925 1391   v4 G:U cWW       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.99 1.98 0.0 0.92 974
2085 2085 16S 28 935 1380   v4 A:U cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.96 0.0 0.92 973
2120 2120 16S 29 942 1341   v4 G:U cWW       Weak E 1 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.98 1.96 0.0 0.92 975
2176 2176 16S 30 950 1231   v4 U:G cWW       Weak E 3 1 0 0.0 0.0 0.0 0.0 0.0 0.99 1.83 1.94 0.0 0.92 974
2218 2218 16S 31 960 975   v4 U:A No BP       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.01 1.0 1.97 1.94 0.0 0.95 1006
2225 2225 16S 31 961 974   v4 U:A No BP       Weak E 0 7 0 0.0 0.12 0.0 0.12 0.03 0.99 1.94 1.78 0.0 0.95 1007
2456 2456 16S 34 1052 1206   v4 U:G cWW       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.97 1.94 0.0 0.94 999
2463 2463 16S 34 1053 1205   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.99 1.98 0.0 0.94 997
2484 2484 16S 34 1058 1199   v4 G:U cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.93 1.98 0.0 0.95 1000
2736 2736 16S 40 1158 1178   v4 C:G No BP       Weak E 5 8 1 0.15 0.06 0.0 0.06 0.81 0.84 1.71 1.23 0.01 0.96 1019
2743 2743 16S 40 1159 1177   v4 U:G No BP       Weak E 15 13 4 0.29 0.31 0.77 1.07 0.03 0.69 0.72 1.0 0.01 0.96 1018
2855 2855 16S 41 1255 1282   v4 G:C cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.03 -0.05 0.0 0.0 1027
3023 3023 16S 44 1401 1501   v4 G:C cWW       Weak E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 2.0 0.0 0.81 860
3156 3156 16S 44 1425 1475   v4 U:G cWW       Weak E 28 17 6 0.27 0.14 0.0 0.14 0.39 0.91 0.61 0.95 0.0 0.91 962
3198 3198 16S 44 1435 1466   v4 G:C cWW       Weak E 15 19 5 0.29 0.13 0.0 0.13 0.55 0.96 0.46 0.43 0.0 0.92 979
3240 3240 16S 44 1442 1460   v4 G:C cWW       Weak E 6 6 0 0.0 0.0 0.0 0.0 0.0 0.0 0.71 1.42 0.0 0.88 1001
3282 3282 16S 45 1506 1529   v4 U:G No BP       Weak E 3 2 0 0.0 0.0 0.0 0.0 0.03 1.0 1.83 1.8 0.01 0.64 684
3317 3317 16S 45 1511 1524   v4 G:C cWW       Weak E 1 5 0 0.0 0.0 0.0 0.0 0.94 0.99 1.89 1.62 0.0 0.67 708
3324 3324 16S 45 1512 1523   v4 U:G cWW       Weak E 0 4 0 0.0 0.03 0.0 0.03 0.0 0.95 1.91 1.63 0.0 0.67 710

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");