Base-pair collective (covariation) scores

425 rows where group_code = "E", molecule = "16S" and strength = "Strong" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: reference_base_pair, tertiary_type, PE, DfDel, PNuc

conformation 6

strength 1

  • Strong · 425 ✖

molecule 1

  • 16S · 425 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
6 6 16S 1 9 25   v4 G:C cWW       Strong E 3 2 2 0.8 0.14 0.0 0.14 0.99 0.99 1.73 1.95 0.02 0.73 784
13 13 16S 1 10 24   v4 A:U cWW       Strong E 3 2 2 0.8 0.9 0.99 1.9 0.99 0.99 1.5 1.63 0.01 0.74 793
20 20 16S 1 11 23   v4 G:C cWW       Strong E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.89 1.99 0.01 0.76 806
27 27 16S 1 12 22   v4 U:G cWW       Strong E 3 4 3 0.86 0.11 0.0 0.11 0.95 0.95 1.63 1.91 0.0 0.77 815
41 41 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong E 2 2 1 0.5 0.04 0.0 0.04 0.97 0.99 1.91 1.81 0.0 0.77 812
48 48 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong E 2 5 1 0.29 0.5 0.93 1.43 0.93 0.93 1.58 1.34 0.0 0.78 825
55 55 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong E 0 3 0 0.0 0.83 0.99 1.83 0.99 0.99 1.82 1.79 0.0 0.78 826
62 62 16S 3 27 556   v4 G:C cWW       Strong E 8 9 5 0.59 0.9 0.97 1.86 0.97 0.97 0.83 0.98 0.0 0.84 883
69 69 16S 3 28 555   v4 A:U cWW       Strong E 9 12 1 0.1 0.03 0.0 0.03 0.26 0.98 1.63 1.19 0.0 0.84 889
76 76 16S 3 29 554   v4 U:A cWW       Strong E 2 6 2 0.5 0.35 0.99 1.34 0.99 0.99 1.5 1.82 0.04 0.79 880
83 83 16S 3 30 553   v4 U:A cWW       Strong E 6 5 4 0.73 0.36 0.98 1.34 0.98 0.99 1.72 1.85 0.01 0.85 898
90 90 16S 3 32 552   v4 A:U cWW       Strong E 6 6 3 0.5 0.47 0.97 1.44 0.97 0.97 1.56 1.61 0.01 0.84 897
97 97 16S 3 33 551   v4 A:U cWW       Strong E 2 3 2 0.8 0.4 1.0 1.4 1.0 1.0 1.87 1.94 0.01 0.84 895
104 104 16S 3 34 550   v4 C:G cWW       Strong E 10 4 2 0.29 0.02 0.0 0.02 0.12 0.99 1.36 1.78 0.01 0.84 893
118 118 16S 3 36 548   v4 C:G cWW       Strong E 0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.89 1.95 0.01 0.85 909
139 139 16S 4 40 402   v4 C:G cWW       Strong E 8 9 6 0.71 0.4 0.98 1.38 0.98 0.98 1.7 1.75 0.01 0.86 917
146 146 16S 4 41 401   v4 G:C cWW       Strong E 9 21 2 0.13 0.03 0.0 0.03 0.44 0.47 1.53 0.37 0.01 0.86 920
153 153 16S 4 42 400   v4 G:C cWW       Strong E 5 6 3 0.55 0.75 0.99 1.74 0.99 1.0 1.76 1.81 0.01 0.87 922
160 160 16S 4 43 399   v4 C:G cWW       Strong E 13 9 4 0.36 0.07 0.0 0.07 0.27 0.29 1.25 1.14 0.01 0.87 922
167 167 16S 4 44 398   v4 A:U cWW       Strong E 7 2 0 0.0 0.48 0.95 1.44 0.01 0.01 1.55 1.57 0.01 0.88 933
174 174 16S 4 45 396   v4 G:C cWW       Strong E 9 5 4 0.57 0.27 0.94 1.21 0.03 0.05 1.68 1.67 0.0 0.89 935
181 181 16S 4 46 395   v4 G:C cWW       Strong E 10 4 3 0.43 0.14 0.0 0.14 0.82 1.0 1.23 1.82 0.0 0.89 938
188 188 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong E 2 2 2 1.0 0.85 1.0 1.85 1.0 1.0 1.83 1.85 0.0 0.89 936
195 195 16S 5 52 359   v4 C:G cWW       Strong E 5 6 5 0.91 0.9 1.0 1.9 1.0 1.0 1.74 1.75 0.0 0.89 940
202 202 16S 5 53 358   v4 A:U cWW       Strong E 3 2 2 0.8 0.33 1.0 1.33 1.0 1.0 1.95 1.99 0.0 0.9 944
223 223 16S 5 57 355   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.99 0.0 0.91 957
237 237 16S 6 61 106   v4 G:C cWW       Strong E 1 10 1 0.18 0.09 0.0 0.09 0.97 0.99 1.91 1.77 0.0 0.91 963
251 251 16S 6 63 104   v4 C:G cWW       Strong E 10 0 0 0.0 0.0 0.0 0.0 0.73 0.74 0.72 1.74 0.05 0.88 971
258 258 16S 6 66 103   v4 A:U cWW       Strong E 7 9 0 0.0 0.13 0.0 0.13 0.84 0.86 1.57 1.06 0.0 0.92 971
265 265 16S 6 67 102   v4 C:G cWW       Strong E 7 8 3 0.4 0.5 0.97 1.47 0.97 0.98 1.66 1.68 0.0 0.92 974
279 279 16S 6 69 99   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.02 -0.02 0.0 0.0 1020
286 286 16S 6 70 98   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
293 293 16S 6 73 97   v4 C:G cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
300 300 16S 6 74 96   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
307 307 16S 6 75 95   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
314 314 16S 6 76 93   v4 G:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
321 321 16S 6 77 92   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
328 328 16S 6 78 91   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
335 335 16S 6 79 90   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
342 342 16S 6 80 89   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
349 349 16S 6 81 88   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
356 356 16S 6 82 87   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 0.0 1020
363 363 16S 6.1 113 314   v4 G:C cWW       Strong E 4 2 2 0.67 0.0 0.0 0.0 1.0 1.0 1.96 2.0 0.0 0.95 1008
370 370 16S 6.1 114 313   v4 U:A cWW       Strong E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 2.0 0.0 0.96 1013
377 377 16S 6.1 115 312   v4 G:C cWW       Strong E 5 3 2 0.5 0.0 0.0 0.0 0.99 1.0 1.95 1.98 0.0 0.96 1009
384 384 16S 7 122 239   v4 G:U cWW       Strong E 19 9 4 0.29 0.59 0.8 1.39 0.03 0.03 0.7 0.94 0.0 0.96 1014
391 391 16S 7 123 238   v4 U:A cWW       Strong E 6 5 5 0.91 0.31 0.98 1.29 0.98 0.98 1.76 1.83 0.0 0.96 1014
398 398 16S 7 124 237   v4 C:G cWW       Strong E 7 5 4 0.67 0.86 0.99 1.86 0.99 1.0 1.6 1.64 0.0 0.96 1014
405 405 16S 7 125 236   v4 U:A cWW       Strong E 7 6 5 0.77 0.87 0.99 1.87 0.99 1.0 1.71 1.72 0.0 0.96 1013
412 412 16S 7 126 235   v4 G:C cWW       Strong E 13 6 2 0.21 0.14 0.0 0.14 0.06 0.06 0.92 1.61 0.0 0.96 1012
419 419 16S 7 127 234   v4 G:C cWW       Strong E 18 15 3 0.18 0.11 0.0 0.11 0.15 0.32 1.17 0.88 0.0 0.96 1013
426 426 16S 7 128 233   v4 G:C cWW       Strong E 15 6 3 0.29 0.46 0.94 1.41 0.94 0.96 1.46 1.55 0.0 0.96 1014
433 433 16S 7 129 232   v4 A:G cWW   3°: base pair   Strong E 6 17 3 0.26 0.03 0.0 0.03 0.73 0.99 1.84 1.12 0.0 0.96 1015
440 440 16S 7 131 231   v4 A:U cWW       Strong E 5 4 4 0.89 0.63 0.99 1.62 0.99 1.0 1.81 1.82 0.0 0.96 1014
447 447 16S 7 132 230   v4 C:G cWW       Strong E 9 13 6 0.55 0.7 0.97 1.67 0.97 0.99 1.54 1.47 0.0 0.96 1015
454 454 16S 7 136 227   v4 C:G cWW       Strong E 6 9 2 0.27 0.23 0.9 1.13 0.12 0.12 1.63 1.28 0.0 0.95 1013
461 461 16S 7 137 226   v4 U:G cWW       Strong E 16 16 11 0.69 0.88 0.95 1.82 0.95 0.99 0.36 0.43 0.0 0.95 1005
468 468 16S 7 138 225   v4 G:C cWW       Strong E 8 8 4 0.5 0.7 0.98 1.68 0.96 0.97 1.52 1.54 0.0 0.95 1006
475 475 16S 7 139 224   v4 A:U cWW       Strong E 19 19 14 0.74 0.69 0.94 1.63 0.94 0.97 1.19 1.21 0.0 0.96 1016
482 482 16S 7 140 223   v4 U:A cWW       Strong E 19 29 13 0.54 0.34 0.68 1.02 0.68 0.69 0.89 0.41 0.0 0.95 1014
489 489 16S 7 141 222   v4 G:C cWW       Strong E 25 33 7 0.24 0.23 0.44 0.67 0.42 0.52 0.3 0.13 0.0 0.96 1015
496 496 16S 7 142 221   v4 G:C cWW       Strong E 39 32 10 0.28 0.19 0.0 0.19 0.1 0.2 0.55 0.85 0.0 0.95 1014
503 503 16S 8 144 178   v4 G:C cWW       Strong E 15 8 3 0.26 0.07 0.0 0.07 0.9 0.95 1.19 1.47 0.04 0.92 1017
510 510 16S 8 145 177   v4 G:G cWW   3°: base pair   Strong E 28 7 4 0.23 0.06 0.0 0.06 0.27 0.28 0.74 1.45 0.03 0.93 1018
517 517 16S 8 146 176   v4 G:C cWW       Strong E 11 10 6 0.57 0.94 0.98 1.92 0.98 0.99 0.76 0.67 0.02 0.94 1015
524 524 16S 8 147 175   v4 G:C cWW       Strong E 4 4 1 0.25 0.59 0.99 1.57 0.99 0.99 1.69 1.66 0.01 0.96 1019
531 531 16S 8 152 169   v4 A:C tHW   3°: base pair   Strong E 16 6 0 0.0 0.07 0.0 0.07 0.01 0.01 1.26 1.66 0.0 0.96 1021
538 538 16S 8 153 168   v4 C:G cWW       Strong E 4 4 3 0.75 0.31 0.99 1.3 0.99 0.99 1.88 1.9 0.0 0.97 1019
545 545 16S 8 154 167   v4 U:A cWW       Strong E 13 10 7 0.61 0.02 0.0 0.02 0.4 0.4 1.0 1.47 0.0 0.97 1020
552 552 16S 8 155 166   v4 A:U cWW       Strong E 7 7 3 0.43 0.53 0.93 1.46 0.11 0.14 1.38 1.3 0.0 0.97 1020
559 559 16S 8 156 165   v4 C:G cWW       Strong E 10 10 8 0.8 0.84 0.98 1.81 0.98 0.99 1.33 1.3 0.0 0.97 1019
566 566 16S 8 157 164   v4 U:G cWW       Strong E 10 4 3 0.43 0.06 0.0 0.06 0.52 0.99 0.93 1.74 0.0 0.96 1019
573 573 16S 8 158 163   v4 G:C cWW       Strong E 7 9 2 0.25 0.69 0.97 1.66 0.97 0.99 1.41 1.41 0.0 0.97 1021
580 580 16S 9 184 193   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
587 587 16S 9 185 192   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
594 594 16S 9 186 191   v4 C:G cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
601 601 16S 10 198 219   v4 G:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 -0.01 0.0 0.0 1028
608 608 16S 10 199 218   v4 A:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
615 615 16S 10 200 217   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
622 622 16S 10 201 216   v4 G:U cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
629 629 16S 10 202 215   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
636 636 16S 10 203 214   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
643 643 16S 10 206 213   v4 C:G cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
650 650 16S 10 207 212   v4 C:G cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1028
657 657 16S 11 240 286   v4 G:C cWW       Strong E 5 5 4 0.8 0.89 1.0 1.89 1.0 1.0 1.79 1.79 0.0 0.97 1026
664 664 16S 11 241 285   v4 G:C cWW       Strong E 8 5 2 0.31 0.07 0.0 0.07 0.88 1.0 1.4 1.91 0.0 0.97 1026
671 671 16S 11 242 284   v4 G:C cWW       Strong E 7 5 2 0.33 0.0 0.0 0.0 0.04 0.99 1.75 1.96 0.0 0.97 1026
678 678 16S 11 245 283   v4 U:U cWW   3°: base pair   Strong E 3 4 3 0.86 0.75 1.0 1.75 0.0 0.0 1.94 1.94 0.0 0.97 1024
685 685 16S 11 247 277   v4 G:C cWW       Strong E 6 6 6 1.0 1.0 1.0 2.0 1.0 1.0 1.06 1.06 0.0 0.97 1025
692 692 16S 11 248 276   v4 C:G cWW       Strong E 10 7 7 0.82 0.65 0.98 1.63 0.98 1.0 1.67 1.74 0.0 0.97 1024
699 699 16S 11 249 275   v4 U:G cWW       Strong E 5 2 1 0.29 0.18 0.0 0.18 0.02 0.99 1.8 1.9 0.0 0.97 1023
706 706 16S 11 252 274   v4 U:A cWW       Strong E 5 7 4 0.67 0.66 0.96 1.62 0.96 0.97 1.59 1.47 0.0 0.97 1023
713 713 16S 11 253 273   v4 A:U cWW       Strong E 12 14 11 0.85 0.9 0.98 1.88 0.98 0.98 1.32 1.3 0.0 0.97 1026
720 720 16S 11 254 272   v4 G:C cWW       Strong E 3 7 3 0.6 0.47 0.98 1.45 0.98 1.0 1.87 1.77 0.0 0.97 1023
727 727 16S 11 255 271   v4 G:C cWW       Strong E 8 9 8 0.94 0.92 0.99 1.91 0.99 1.0 1.6 1.58 0.0 0.97 1026
734 734 16S 11 256 270   v4 U:A cWW       Strong E 7 6 6 0.92 0.82 0.99 1.81 0.99 0.99 1.71 1.68 0.0 0.97 1025
741 741 16S 11 257 269   v4 G:C cWW       Strong E 9 6 5 0.67 0.44 0.97 1.41 0.97 0.97 1.59 1.68 0.0 0.97 1025
748 748 16S 11 258 268   v4 G:U cWW       Strong E 16 14 11 0.73 0.78 0.93 1.71 0.93 0.94 0.84 1.13 0.0 0.97 1026
755 755 16S 11 259 267   v4 G:C cWW       Strong E 19 17 15 0.83 0.91 0.98 1.89 0.98 0.98 0.97 1.01 0.0 0.97 1025
762 762 16S 12 289 311   v4 G:C cWW       Strong E 2 2 2 1.0 0.0 0.0 0.0 0.99 0.99 1.99 1.95 0.0 0.97 1024

Next page

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");