Base-pair collective (covariation) scores

1,207 rows where group_code = "C" and strength = "Strong" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, DfDel

conformation 11

molecule 2

strength 1

  • Strong · 1,207 ✖

group_code 1

  • C · 1,207 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3351 3351 23S 1 1 2902   v4 G:C cWW       Strong C 2 3 1 0.4 0.64 0.77 1.4 0.77 0.94 -0.53 0.68 0.78 0.17 47
3358 3358 23S 1 2 2901   v4 G:C cWW       Strong C 3 3 0 0.0 0.6 0.76 1.36 0.76 0.8 -0.68 0.51 0.61 0.24 46
3365 3365 23S 1 3 2900   v4 U:A cWW       Strong C 1 2 0 0.0 0.14 0.0 0.14 0.5 0.98 1.65 0.4 0.02 0.41 44
3372 3372 23S 1 4 2899   v4 U:A cWW       Strong C 5 4 1 0.22 0.12 0.0 0.12 0.52 0.55 1.09 0.76 0.0 0.43 44
3379 3379 23S 1 5 2898   v4 A:U cWW       Strong C 2 2 1 0.5 1.0 1.0 2.0 1.0 1.0 1.7 1.72 0.0 0.43 44
3386 3386 23S 1 6 2897   v4 A:U cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.74 1.76 0.0 0.43 44
3393 3393 23S 1 7 2896   v4 G:C cWW       Strong C 2 4 1 0.33 0.64 0.89 1.53 0.89 0.89 1.14 0.82 0.0 0.43 44
5 5 16S 1 9 25   v4 G:C cWW       Strong C 2 0 0 0.0 0.0 0.0 0.0 0.98 0.98 1.81 2.0 0.0 0.68 123
12 12 16S 1 10 24   v4 A:U cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.68 124
19 19 16S 1 11 23   v4 G:C cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.93 2.0 0.0 0.69 125
26 26 16S 1 12 22   v4 U:G cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.93 2.0 0.0 0.69 126
3407 3407 23S 2 15 525   v4 G:U cWW       Strong C 3 9 0 0.0 0.48 0.7 1.18 0.15 0.37 0.85 0.43 0.0 0.45 46
3414 3414 23S 2 16 524   v4 C:G cWW       Strong C 2 3 1 0.4 0.07 0.0 0.07 0.3 0.98 1.11 1.78 0.0 0.45 46
40 40 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.93 0.01 0.64 117
3421 3421 23S 2 17 523   v4 G:C cWW       Strong C 2 2 1 0.5 0.25 0.94 1.19 0.94 0.96 1.59 1.81 0.0 0.45 46
47 47 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong C 1 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.94 1.93 0.01 0.65 118
3428 3428 23S 2 18 522   v4 U:A cWW       Strong C 4 6 2 0.4 0.71 0.96 1.67 0.96 0.96 1.18 1.38 0.0 0.45 46
54 54 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong C 5 2 1 0.29 0.0 0.0 0.0 0.92 0.92 1.4 1.93 0.0 0.64 117
3435 3435 23S 2 19 521   v4 A:U cWW       Strong C 4 9 0 0.0 0.41 0.78 1.19 0.83 0.98 0.76 0.62 0.0 0.45 46
3442 3442 23S 2 20 520   v4 C:G cWW       Strong C 1 8 0 0.0 0.0 0.0 0.0 0.85 0.96 1.74 1.08 0.0 0.45 46
3449 3449 23S 2 21 519   v4 A:U cWW       Strong C 2 1 0 0.0 0.0 0.0 0.0 0.91 0.98 1.5 1.84 0.0 0.45 46
3456 3456 23S 2 22 518   v4 C:G cWW       Strong C 5 6 0 0.0 0.81 0.93 1.75 0.93 1.0 0.52 0.87 0.01 0.44 46
3463 3463 23S 2 23 517   v4 G:C cWW       Strong C 1 1 0 0.0 1.0 1.0 2.0 1.0 1.0 1.65 1.81 0.0 0.45 46
3470 3470 23S 2 24 516   v4 G:C cWW       Strong C 3 8 2 0.36 0.78 0.96 1.73 0.96 1.0 1.01 1.2 0.0 0.45 46
61 61 16S 3 27 556   v4 G:C cWW       Strong C 0 1 0 0.0 0.67 0.99 1.66 0.99 1.0 1.89 1.87 0.0 0.72 132
68 68 16S 3 28 555   v4 A:U cWW       Strong C 5 6 2 0.36 0.62 0.98 1.6 0.98 0.99 1.68 1.61 0.0 0.73 133
75 75 16S 3 29 554   v4 U:A cWW       Strong C 3 1 1 0.5 0.22 0.95 1.17 0.95 0.98 1.61 1.91 0.0 0.74 134
82 82 16S 3 30 553   v4 U:A cWW       Strong C 4 3 1 0.29 0.5 0.96 1.46 0.96 0.97 1.49 1.68 0.0 0.74 134
3477 3477 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong C 1 2 0 0.0 0.33 0.87 1.2 0.13 0.13 1.31 1.56 0.0 0.45 46
3484 3484 23S 3 31 474   v4 C:G cWW       Strong C 1 4 0 0.0 1.0 1.0 2.0 1.0 1.0 1.31 1.43 0.0 0.45 46
89 89 16S 3 32 552   v4 A:U cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 135
3491 3491 23S 3 32 473   v4 C:G cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.45 46
96 96 16S 3 33 551   v4 A:U cWW       Strong C 1 0 0 0.0 0.67 0.99 1.66 0.99 0.99 1.83 1.91 0.0 0.74 135
103 103 16S 3 34 550   v4 C:G cWW       Strong C 1 1 0 0.0 0.0 0.0 0.0 0.98 0.99 1.94 1.95 0.0 0.75 136
3498 3498 23S 4 35 445   v4 G:C cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.85 1.92 0.0 0.45 46
117 117 16S 3 36 548   v4 C:G cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.83 152
3505 3505 23S 4 36 444   v4 G:C cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.85 1.92 0.0 0.45 46
3512 3512 23S 4 37 442   v4 C:G cWW       Strong C 3 6 1 0.22 0.43 0.91 1.34 0.91 0.96 1.5 1.48 0.0 0.45 46
3519 3519 23S 4 38 441   v4 A:U cWW       Strong C 2 4 2 0.67 1.0 1.0 2.0 1.0 1.0 1.7 1.73 0.0 0.45 46
3526 3526 23S 4 39 440   v4 G:C cWW       Strong C 4 6 3 0.6 0.85 0.96 1.81 0.96 1.0 1.17 1.26 0.0 0.75 77
138 138 16S 4 40 402   v4 C:G cWW       Strong C 3 5 2 0.5 0.33 0.97 1.31 0.98 0.98 1.73 1.74 0.0 0.85 155
3533 3533 23S 4 40 439   v4 U:A cWW       Strong C 7 8 6 0.8 0.97 0.99 1.96 0.99 1.0 1.0 1.0 0.0 0.75 77
145 145 16S 4 41 401   v4 G:C cWW       Strong C 5 5 4 0.8 0.64 0.97 1.61 0.97 0.98 1.61 1.67 0.0 0.85 154
3540 3540 23S 4 41 438   v4 C:G cWW       Strong C 6 7 7 1.0 1.0 1.0 2.0 1.0 1.0 1.26 1.26 0.0 0.75 77
152 152 16S 4 42 400   v4 G:C cWW       Strong C 3 4 2 0.57 0.62 0.98 1.61 0.98 0.99 1.71 1.7 0.0 0.85 155
3547 3547 23S 4 42 437   v4 A:U cWW       Strong C 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.83 1.78 0.0 0.75 77
159 159 16S 4 43 399   v4 C:G cWW       Strong C 9 9 7 0.78 0.95 0.98 1.94 0.98 0.99 0.93 0.98 0.0 0.86 156
3554 3554 23S 4 43 436   v4 G:C cWW       Strong C 5 6 4 0.73 1.0 1.0 2.0 1.0 1.0 1.43 1.45 0.0 0.77 79
166 166 16S 4 44 398   v4 A:U cWW       Strong C 5 4 2 0.44 0.79 0.98 1.77 0.98 0.98 1.53 1.58 0.0 0.86 156
3561 3561 23S 4 44 434   v4 A:U cWW       Strong C 2 1 1 0.67 0.33 0.97 1.31 0.97 1.0 1.73 1.92 0.0 0.77 79
173 173 16S 4 45 396   v4 G:C cWW       Strong C 2 5 2 0.57 0.1 0.0 0.1 0.94 1.0 1.95 1.62 0.0 0.86 156
3568 3568 23S 4 45 433   v4 G:C cWW       Strong C 3 4 2 0.57 0.85 0.97 1.82 0.97 1.0 1.42 1.39 0.0 0.77 79
180 180 16S 4 46 395   v4 G:C cWW       Strong C 2 4 2 0.67 0.75 0.99 1.74 0.99 0.99 1.86 1.78 0.0 0.86 156
3575 3575 23S 4.1 46 179   v4 G:C cWW       Strong C 4 11 0 0.0 0.22 0.58 0.8 0.14 0.16 1.08 0.42 0.03 0.74 79
187 187 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong C 1 1 0 0.0 0.0 0.0 0.0 0.97 0.97 1.88 1.85 0.01 0.85 156
3582 3582 23S 4.1 47 178   v4 C:G cWW       Strong C 2 2 1 0.5 0.5 0.99 1.49 0.99 0.99 1.8 1.54 0.02 0.75 79
194 194 16S 5 52 359   v4 C:G cWW       Strong C 2 3 2 0.8 0.8 0.99 1.79 0.99 0.99 1.83 1.74 0.01 0.85 156
201 201 16S 5 53 358   v4 A:U cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
3596 3596 23S 5 54 116   v4 G:C cWW       Strong C 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.9 1.86 0.0 0.79 81
3603 3603 23S 5 55 115   v4 G:C cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.83 86
3610 3610 23S 5 56 114   v4 A:U cWW       Strong C 2 2 1 0.5 0.8 0.99 1.79 0.99 0.99 1.68 1.76 0.0 0.83 86
222 222 16S 5 57 355   v4 G:C cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.86 157
3617 3617 23S 6 57 70   v4 C:G cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.98 1.0 1.84 2.0 0.0 0.84 87
3624 3624 23S 6 58 69   v4 G:C cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.91 94
3631 3631 23S 6 59 68   v4 U:G cWW       Strong C 5 6 4 0.73 0.98 0.99 1.97 0.99 1.0 1.0 1.0 0.0 0.91 94
236 236 16S 6 61 106   v4 G:C cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.83 1.84 0.0 0.89 162
3638 3638 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong C 5 7 3 0.5 0.34 0.79 1.14 0.79 0.96 1.13 0.8 0.0 0.89 94
3645 3645 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong C 10 7 4 0.47 0.28 0.7 0.98 0.27 0.27 0.65 1.02 0.01 0.91 95
250 250 16S 6 63 104   v4 C:G cWW       Strong C 9 8 4 0.47 0.48 0.93 1.4 0.93 0.99 1.43 1.6 0.0 0.89 162
3659 3659 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong C 5 4 4 0.89 0.65 0.94 1.58 0.91 0.91 0.98 1.2 0.01 0.92 96
257 257 16S 6 66 103   v4 A:U cWW       Strong C 1 1 1 1.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 163
264 264 16S 6 67 102   v4 C:G cWW       Strong C 2 4 1 0.33 0.57 0.98 1.55 0.98 0.98 1.78 1.69 0.0 0.9 163
3673 3673 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong C 8 11 7 0.74 0.4 0.78 1.18 0.78 0.98 1.18 0.73 0.0 0.93 96
278 278 16S 6 69 99   v4 G:C cWW       Strong C 20 20 5 0.25 0.46 0.63 1.09 0.63 0.75 0.59 0.31 0.0 0.9 164
285 285 16S 6 70 98   v4 U:A cWW       Strong C 18 18 7 0.39 0.61 0.76 1.36 0.76 0.91 0.52 0.41 0.01 0.87 163
292 292 16S 6 73 97   v4 C:G cWW       Strong C 2 2 0 0.0 0.27 0.45 0.72 0.45 0.55 -0.51 -0.49 0.02 0.11 164
299 299 16S 6 74 96   v4 A:U cWW       Strong C 4 1 0 0.0 0.44 0.57 1.01 0.29 0.33 -0.53 -0.52 0.02 0.12 164
306 306 16S 6 75 95   v4 G:C cWW       Strong C 4 3 0 0.0 0.5 0.65 1.15 0.56 0.61 -0.65 -0.57 0.06 0.13 164
313 313 16S 6 76 93   v4 G:U cWW       Strong C 9 9 5 0.56 0.67 0.81 1.47 0.81 0.88 -0.8 -0.83 0.03 0.31 164
3680 3680 23S 7 76 110   v4 C:G cWW       Strong C 3 2 2 0.8 0.8 0.99 1.79 0.99 0.99 1.67 1.76 0.0 0.95 98
320 320 16S 6 77 92   v4 A:U cWW       Strong C 9 9 6 0.67 0.78 0.89 1.67 0.89 0.95 -0.8 -0.74 0.03 0.34 164
3687 3687 23S 7 77 109   v4 G:C cWW       Strong C 2 5 2 0.57 0.5 0.97 1.47 0.96 0.98 1.77 1.58 0.0 0.95 98
327 327 16S 6 78 91   v4 A:U cWW       Strong C 7 8 4 0.53 0.47 0.7 1.18 0.69 0.94 -0.85 -0.84 0.02 0.37 165
3694 3694 23S 7 78 108   v4 U:G cWW       Strong C 5 12 2 0.23 0.2 0.0 0.2 0.63 0.98 1.56 0.88 0.0 0.95 98
334 334 16S 6 79 90   v4 G:C cWW       Strong C 15 14 7 0.48 0.73 0.87 1.6 0.87 0.96 -0.81 -0.69 0.02 0.55 165
3701 3701 23S 7 79 107   v4 C:G cWW       Strong C 7 6 7 1.0 0.92 0.99 1.91 0.99 1.0 1.28 1.31 0.0 0.95 98
341 341 16S 6 80 89   v4 A:U cWW       Strong C 17 18 16 0.91 0.89 0.95 1.84 0.95 0.97 0.0 -0.08 0.02 0.86 165
3708 3708 23S 7 80 106   v4 G:C cWW       Strong C 2 1 1 0.67 0.75 0.99 1.74 0.99 1.0 1.71 1.7 0.0 0.95 98
348 348 16S 6 81 88   v4 A:U cWW       Strong C 20 17 9 0.49 0.65 0.77 1.41 0.77 0.98 0.03 0.04 0.0 0.89 165
3715 3715 23S 7 81 105   v4 G:C cWW       Strong C 5 4 4 0.89 0.71 0.96 1.67 0.96 0.96 1.28 1.4 0.0 0.95 98
355 355 16S 6 82 87   v4 G:C cWW       Strong C 20 21 15 0.73 0.6 0.72 1.33 0.72 0.98 0.05 0.04 0.01 0.89 165
3722 3722 23S 7 82 104   v4 U:A tSH       Strong C 4 4 3 0.75 0.5 0.96 1.46 0.04 0.96 1.57 1.58 0.0 0.95 98
3729 3729 23S 7 85 97   v4 G:C cWW       Strong C 3 6 3 0.67 0.42 0.93 1.35 0.93 0.97 1.53 1.42 0.0 0.96 99
3736 3736 23S 7 86 96   v4 G:C cWW       Strong C 11 5 3 0.38 0.33 0.82 1.15 0.82 0.99 1.02 1.46 0.0 0.96 99
3743 3743 23S 7 87 95   v4 U:A cWW       Strong C 3 5 3 0.75 0.56 0.96 1.51 0.96 0.97 1.64 1.42 0.0 0.96 99
362 362 16S 6.1 113 314   v4 G:C cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.95 1.95 0.0 0.9 164
369 369 16S 6.1 114 313   v4 U:A cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.9 164
376 376 16S 6.1 115 312   v4 G:C cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.9 164
3750 3750 23S 8 121 130   v4 G:C cWW       Strong C 9 8 6 0.71 0.61 0.9 1.51 0.9 0.98 1.2 1.22 0.0 0.96 99
383 383 16S 7 122 239   v4 G:U cWW       Strong C 12 11 3 0.26 0.3 0.69 1.0 0.19 0.75 1.01 0.87 0.01 0.92 168

Next page

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");