Base-pair collective (covariation) scores

61 rows where group_code = "C", molecule = "23S" and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WCGU, DfDel, PNuc, Seq

conformation 3

strength 1

  • Weak · 61 ✖

molecule 1

  • 23S · 61 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3400 3400 23S 1 8 2895   v4 C:G cWW       Weak C 4 4 1 0.25 0.26 0.68 0.94 0.68 0.7 0.57 1.32 0.0 0.43 44
3666 3666 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak C 2 2 1 0.5 0.5 0.97 1.47 0.97 0.97 1.66 1.51 0.01 0.92 96
3876 3876 23S 10 158 168   v4 U:G cWW       Weak C 6 13 3 0.32 0.17 0.0 0.17 0.18 0.65 0.17 0.32 0.07 0.85 99
4058 4058 23S 16 274 363   v4 C:G cWW       Weak C 5 2 0 0.0 0.43 0.56 0.98 0.44 0.44 -0.85 -0.64 0.32 0.09 100
4065 4065 23S 18 281 359   v4 C:G cWW       Weak C 14 9 3 0.26 0.32 0.55 0.87 0.55 0.61 -0.8 -0.62 0.05 0.49 99
4086 4086 23S 18 284 356   v4 U:G cWW       Weak C 22 16 4 0.21 0.22 0.34 0.56 0.33 0.49 -0.48 -0.68 0.01 0.74 99
4149 4149 23S 18 293 347   v4 U:A cWW       Weak C 17 10 5 0.37 0.23 0.61 0.84 0.61 0.61 0.12 0.16 0.14 0.78 100
4247 4247 23S 20 327 335   v4 G:C cWW       Weak C 0 0 0 0.0 1.0 1.0 2.0 1.0 1.0 1.74 1.67 0.01 0.94 100
4275 4275 23S 21 378 396   v4 C:G cWW       Weak C 3 1 1 0.5 0.33 0.94 1.27 0.07 0.98 1.47 1.81 0.0 0.97 100
4303 4303 23S 21 382 392   v4 A:U cWW       Weak C 10 0 0 0.0 0.05 0.0 0.05 0.4 0.98 0.93 1.76 0.0 0.96 100
4464 4464 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.01 2.0 1.63 0.0 0.97 100
4520 4520 23S 25.1 564 577   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
4660 4660 23S 27 600 657   v4 G:U cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.02 1.0 1.86 2.0 0.0 0.97 100
4758 4758 23S 31 641 647   v4 U:G cWW       Weak C 2 7 1 0.22 0.14 0.0 0.14 0.1 0.96 1.76 1.36 0.0 0.97 100
4765 4765 23S 32 671 809   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.82 0.02 0.95 100
4828 4828 23S 33 687 775   v4 C:G No BP       Weak C 1 2 0 0.0 0.0 0.0 0.0 0.95 0.95 1.86 1.81 0.0 0.97 100
4884 4884 23S 33 695 767   v4 G:U cWW       Weak C 3 1 1 0.5 0.5 0.98 1.48 0.03 0.99 1.73 1.86 0.0 0.97 100
4933 4933 23S 34 703 729   v4 U:G No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.97 100
4940 4940 23S 34 707 724   v4 G:U cWW       Weak C 5 1 0 0.0 0.08 0.0 0.08 0.11 0.98 1.52 1.71 0.0 0.97 100
5136 5136 23S 37 826 831   v4 U:G cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.01 0.99 1.92 1.74 0.02 0.95 100
5710 5710 23S 42 1051 1108   v4 G:U cWW       Weak C 2 1 0 0.0 0.0 0.0 0.0 0.85 0.99 1.37 1.74 0.02 0.95 100
5955 5955 23S 46 1215 1234   v4 G:U cWW       Weak C 3 0 0 0.0 0.0 0.0 0.0 0.02 0.98 1.72 2.0 0.0 0.97 100
6417 6417 23S 54 1415 1587   v4 U:G cWW       Weak C 12 4 1 0.12 0.83 0.91 1.73 0.91 0.93 0.37 0.24 0.01 0.94 100
6515 6515 23S 56 1436 1556   v4 G:C cWW       Weak C 7 7 2 0.29 0.05 0.0 0.05 0.35 0.98 1.05 0.81 0.0 0.95 100
6529 6529 23S 56 1440 1551   v4 U:A cWW       Weak C 10 13 5 0.43 0.28 0.59 0.87 0.57 0.64 0.21 -0.32 0.09 0.73 100
6564 6564 23S 57 1445 1466   v4 G:U cWW       Weak C 8 2 2 0.4 0.64 0.88 1.52 0.34 1.0 -0.29 -0.58 0.38 0.4 100
6613 6613 23S 58 1468 1524   v4 U:G cWW       Weak C 6 8 1 0.14 0.33 0.68 1.01 0.58 0.65 0.04 -0.09 0.0 0.85 100
6648 6648 23S 58 1478 1513   v4 G:U cWW       Weak C 8 11 2 0.21 0.11 0.0 0.11 0.33 0.81 0.59 -0.18 0.02 0.84 100
6669 6669 23S 58 1481 1510   v4 U:G cWW       Weak C 7 0 0 0.0 0.5 0.82 1.32 0.64 0.64 -0.21 -0.46 0.0 0.0 100
6683 6683 23S 58 1483 1506   v4 G:U cWW       Weak C 12 3 1 0.13 0.25 0.79 1.04 0.03 0.14 -0.17 -0.37 0.15 0.56 100
6991 6991 23S 63 1707 1751   v4 G:U cWW       Weak C 8 16 5 0.42 0.02 0.0 0.02 0.49 0.99 1.23 1.14 0.0 0.98 101
7131 7131 23S 64 1770 1982   v4 G:U cWW       Weak C 1 2 0 0.0 0.0 0.0 0.0 0.04 0.99 1.74 1.73 0.02 0.96 101
7152 7152 23S 65 1775 1789   v4 U:A tHS       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7229 7229 23S 66 1799 1820   v4 G:U No BP       Weak C 0 3 0 0.0 0.0 0.0 0.0 0.01 0.97 2.0 1.73 0.0 0.98 101
7243 7243 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak C 0 10 0 0.0 0.0 0.0 0.0 0.04 0.04 2.0 0.36 0.01 0.97 101
7299 7299 23S 68 1835 1905   v4 G:C cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7327 7327 23S 68 1841 1901   v4 U:A cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7334 7334 23S 68 1842 1898   v4 G:U cWW       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.92 0.0 0.98 101
7383 7383 23S 68 1851 1891   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.98 101
7474 7474 23S 69 1907 1923   v4 G:U cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.98 101
7502 7502 23S 69 1911 1919   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7523 7523 23S 71 1945 1961   v4 G:C cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7537 7537 23S 71 1947 1959   v4 C:G cWW       Weak C 0 0 0 0.0 1.0 1.0 2.0 1.0 1.0 1.92 1.92 0.0 0.98 101
7677 7677 23S 73 2056 2612   v4 G:C cWW       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.77 0.0 0.51 52
7698 7698 23S 74 2065 2445   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96 99
7761 7761 23S 74 2075 2434   v4 U:A No BP       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96 99
7768 7768 23S 75 2077 2243   v4 A:U cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 2.0 0.0 0.97 100
7894 7894 23S 76 2100 2189   v4 G:U cWW       Weak C 6 1 1 0.29 0.1 0.0 0.1 0.09 0.99 1.44 1.92 0.0 0.98 101
7957 7957 23S 76 2109 2180   v4 U:U cWW   3°: base pair   Weak C 2 1 0 0.0 0.0 0.0 0.0 0.01 0.01 1.84 1.92 0.0 0.98 101
7992 7992 23S 77 2120 2178   v4 G:C cWW       Weak C 4 1 0 0.0 0.0 0.0 0.0 0.1 1.0 1.6 1.86 0.0 0.98 101
8048 8048 23S 78 2136 2155   v4 G:U cWW       Weak C 9 16 5 0.4 0.11 0.0 0.11 0.51 0.89 0.46 0.33 0.0 0.96 101
8097 8097 23S 78 2143 2148   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.62 1.62 0.0 0.93 101
8195 8195 23S 80 2249 2255   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.02 1.0 2.0 1.86 0.0 0.99 102
8279 8279 23S 83 2291 2341   v4 U:G cWW       Weak C 1 1 0 0.0 0.67 0.99 1.66 0.01 0.98 1.86 1.81 0.0 0.99 102
8391 8391 23S 85.1 2328 2387   v4 A:U cWW   3°: pseudoknot   Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.99 102
8440 8440 23S 86 2351 2366   v4 G:A cWW   3°: base pair   Weak C 8 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.35 2.0 0.0 0.99 102
8566 8566 23S 89 2455 2496   v4 G:C cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.99 102
8594 8594 23S 89 2460 2490   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.99 102
8853 8853 23S 93 2592 2601   v4 G:C cWW       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.94 0.94 2.0 1.7 0.0 0.53 55
9007 9007 23S 95 2652 2668   v4 C:G cWW       Weak C 6 4 2 0.4 0.69 0.81 1.5 0.81 1.0 0.23 0.43 0.0 0.56 58
9112 9112 23S 96 2696 2711   v4 U:A cWW       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.78 0.0 0.56 58

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");