Base-pair collective (covariation) scores

11 rows where group_code = "C", molecule = "23S" and strength = "Significant" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

conformation 4

strength 1

  • Significant · 11 ✖

molecule 1

  • 23S · 11 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3589 3589 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant C 0 2 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.71 0.0 0.79 81
3652 3652 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant C 2 8 1 0.2 0.05 0.0 0.05 0.05 0.05 1.57 0.66 0.03 0.9 96
3988 3988 23S 13 239 258   v4 C:G cWW       Significant C 11 19 6 0.4 0.28 0.49 0.77 0.42 0.64 0.48 0.3 0.0 0.97 100
4107 4107 23S 18 287 353   v4 G:C cWW       Significant C 17 16 7 0.42 0.24 0.46 0.7 0.46 0.47 -0.36 -0.25 0.01 0.79 100
4835 4835 23S 33 688 774   v4 U:G No BP       Significant C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
5332 5332 23S 38 874 903   v4 G:C cWW       Significant C 3 3 2 0.67 0.33 0.94 1.27 0.92 0.96 1.56 1.67 0.0 0.97 100
5647 5647 23S 42 1035 1120   v4 U:G cWW       Significant C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.99 2.0 1.84 0.0 0.97 100
6242 6242 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant C 2 3 2 0.8 0.5 0.98 1.48 0.98 1.0 1.86 1.76 0.0 0.97 100
6935 6935 23S 61 1667 1993   v4 G:U tSH       Significant C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.98 101
8020 8020 23S 77 2124 2174   v4 G:C cWW       Significant C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 2.0 0.0 0.98 101
8545 8545 23S 88 2401 2415   v4 U:G cWW       Significant C 3 4 2 0.57 0.43 0.96 1.39 0.02 0.95 1.73 1.6 0.0 0.98 101

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");