Base-pair collective (covariation) scores

870 rows where group_code = "C" and molecule = "23S" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, DfDel, Seq

conformation 9

strength 5

molecule 1

  • 23S · 870 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3351 3351 23S 1 1 2902   v4 G:C cWW       Strong C 2 3 1 0.4 0.64 0.77 1.4 0.77 0.94 -0.53 0.68 0.78 0.17 47
3358 3358 23S 1 2 2901   v4 G:C cWW       Strong C 3 3 0 0.0 0.6 0.76 1.36 0.76 0.8 -0.68 0.51 0.61 0.24 46
3365 3365 23S 1 3 2900   v4 U:A cWW       Strong C 1 2 0 0.0 0.14 0.0 0.14 0.5 0.98 1.65 0.4 0.02 0.41 44
3372 3372 23S 1 4 2899   v4 U:A cWW       Strong C 5 4 1 0.22 0.12 0.0 0.12 0.52 0.55 1.09 0.76 0.0 0.43 44
3379 3379 23S 1 5 2898   v4 A:U cWW       Strong C 2 2 1 0.5 1.0 1.0 2.0 1.0 1.0 1.7 1.72 0.0 0.43 44
3386 3386 23S 1 6 2897   v4 A:U cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.74 1.76 0.0 0.43 44
3393 3393 23S 1 7 2896   v4 G:C cWW       Strong C 2 4 1 0.33 0.64 0.89 1.53 0.89 0.89 1.14 0.82 0.0 0.43 44
3400 3400 23S 1 8 2895   v4 C:G cWW       Weak C 4 4 1 0.25 0.26 0.68 0.94 0.68 0.7 0.57 1.32 0.0 0.43 44
3407 3407 23S 2 15 525   v4 G:U cWW       Strong C 3 9 0 0.0 0.48 0.7 1.18 0.15 0.37 0.85 0.43 0.0 0.45 46
3414 3414 23S 2 16 524   v4 C:G cWW       Strong C 2 3 1 0.4 0.07 0.0 0.07 0.3 0.98 1.11 1.78 0.0 0.45 46
3421 3421 23S 2 17 523   v4 G:C cWW       Strong C 2 2 1 0.5 0.25 0.94 1.19 0.94 0.96 1.59 1.81 0.0 0.45 46
3428 3428 23S 2 18 522   v4 U:A cWW       Strong C 4 6 2 0.4 0.71 0.96 1.67 0.96 0.96 1.18 1.38 0.0 0.45 46
3435 3435 23S 2 19 521   v4 A:U cWW       Strong C 4 9 0 0.0 0.41 0.78 1.19 0.83 0.98 0.76 0.62 0.0 0.45 46
3442 3442 23S 2 20 520   v4 C:G cWW       Strong C 1 8 0 0.0 0.0 0.0 0.0 0.85 0.96 1.74 1.08 0.0 0.45 46
3449 3449 23S 2 21 519   v4 A:U cWW       Strong C 2 1 0 0.0 0.0 0.0 0.0 0.91 0.98 1.5 1.84 0.0 0.45 46
3456 3456 23S 2 22 518   v4 C:G cWW       Strong C 5 6 0 0.0 0.81 0.93 1.75 0.93 1.0 0.52 0.87 0.01 0.44 46
3463 3463 23S 2 23 517   v4 G:C cWW       Strong C 1 1 0 0.0 1.0 1.0 2.0 1.0 1.0 1.65 1.81 0.0 0.45 46
3470 3470 23S 2 24 516   v4 G:C cWW       Strong C 3 8 2 0.36 0.78 0.96 1.73 0.96 1.0 1.01 1.2 0.0 0.45 46
3477 3477 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong C 1 2 0 0.0 0.33 0.87 1.2 0.13 0.13 1.31 1.56 0.0 0.45 46
3484 3484 23S 3 31 474   v4 C:G cWW       Strong C 1 4 0 0.0 1.0 1.0 2.0 1.0 1.0 1.31 1.43 0.0 0.45 46
3491 3491 23S 3 32 473   v4 C:G cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.45 46
3498 3498 23S 4 35 445   v4 G:C cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.85 1.92 0.0 0.45 46
3505 3505 23S 4 36 444   v4 G:C cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.85 1.92 0.0 0.45 46
3512 3512 23S 4 37 442   v4 C:G cWW       Strong C 3 6 1 0.22 0.43 0.91 1.34 0.91 0.96 1.5 1.48 0.0 0.45 46
3519 3519 23S 4 38 441   v4 A:U cWW       Strong C 2 4 2 0.67 1.0 1.0 2.0 1.0 1.0 1.7 1.73 0.0 0.45 46
3526 3526 23S 4 39 440   v4 G:C cWW       Strong C 4 6 3 0.6 0.85 0.96 1.81 0.96 1.0 1.17 1.26 0.0 0.75 77
3533 3533 23S 4 40 439   v4 U:A cWW       Strong C 7 8 6 0.8 0.97 0.99 1.96 0.99 1.0 1.0 1.0 0.0 0.75 77
3540 3540 23S 4 41 438   v4 C:G cWW       Strong C 6 7 7 1.0 1.0 1.0 2.0 1.0 1.0 1.26 1.26 0.0 0.75 77
3547 3547 23S 4 42 437   v4 A:U cWW       Strong C 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.83 1.78 0.0 0.75 77
3554 3554 23S 4 43 436   v4 G:C cWW       Strong C 5 6 4 0.73 1.0 1.0 2.0 1.0 1.0 1.43 1.45 0.0 0.77 79
3561 3561 23S 4 44 434   v4 A:U cWW       Strong C 2 1 1 0.67 0.33 0.97 1.31 0.97 1.0 1.73 1.92 0.0 0.77 79
3568 3568 23S 4 45 433   v4 G:C cWW       Strong C 3 4 2 0.57 0.85 0.97 1.82 0.97 1.0 1.42 1.39 0.0 0.77 79
3575 3575 23S 4.1 46 179   v4 G:C cWW       Strong C 4 11 0 0.0 0.22 0.58 0.8 0.14 0.16 1.08 0.42 0.03 0.74 79
3582 3582 23S 4.1 47 178   v4 C:G cWW       Strong C 2 2 1 0.5 0.5 0.99 1.49 0.99 0.99 1.8 1.54 0.02 0.75 79
3589 3589 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant C 0 2 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.71 0.0 0.79 81
3596 3596 23S 5 54 116   v4 G:C cWW       Strong C 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.9 1.86 0.0 0.79 81
3603 3603 23S 5 55 115   v4 G:C cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.83 86
3610 3610 23S 5 56 114   v4 A:U cWW       Strong C 2 2 1 0.5 0.8 0.99 1.79 0.99 0.99 1.68 1.76 0.0 0.83 86
3617 3617 23S 6 57 70   v4 C:G cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.98 1.0 1.84 2.0 0.0 0.84 87
3624 3624 23S 6 58 69   v4 G:C cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.91 94
3631 3631 23S 6 59 68   v4 U:G cWW       Strong C 5 6 4 0.73 0.98 0.99 1.97 0.99 1.0 1.0 1.0 0.0 0.91 94
3638 3638 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong C 5 7 3 0.5 0.34 0.79 1.14 0.79 0.96 1.13 0.8 0.0 0.89 94
3645 3645 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong C 10 7 4 0.47 0.28 0.7 0.98 0.27 0.27 0.65 1.02 0.01 0.91 95
3652 3652 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant C 2 8 1 0.2 0.05 0.0 0.05 0.05 0.05 1.57 0.66 0.03 0.9 96
3659 3659 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong C 5 4 4 0.89 0.65 0.94 1.58 0.91 0.91 0.98 1.2 0.01 0.92 96
3666 3666 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak C 2 2 1 0.5 0.5 0.97 1.47 0.97 0.97 1.66 1.51 0.01 0.92 96
3673 3673 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong C 8 11 7 0.74 0.4 0.78 1.18 0.78 0.98 1.18 0.73 0.0 0.93 96
3680 3680 23S 7 76 110   v4 C:G cWW       Strong C 3 2 2 0.8 0.8 0.99 1.79 0.99 0.99 1.67 1.76 0.0 0.95 98
3687 3687 23S 7 77 109   v4 G:C cWW       Strong C 2 5 2 0.57 0.5 0.97 1.47 0.96 0.98 1.77 1.58 0.0 0.95 98
3694 3694 23S 7 78 108   v4 U:G cWW       Strong C 5 12 2 0.23 0.2 0.0 0.2 0.63 0.98 1.56 0.88 0.0 0.95 98
3701 3701 23S 7 79 107   v4 C:G cWW       Strong C 7 6 7 1.0 0.92 0.99 1.91 0.99 1.0 1.28 1.31 0.0 0.95 98
3708 3708 23S 7 80 106   v4 G:C cWW       Strong C 2 1 1 0.67 0.75 0.99 1.74 0.99 1.0 1.71 1.7 0.0 0.95 98
3715 3715 23S 7 81 105   v4 G:C cWW       Strong C 5 4 4 0.89 0.71 0.96 1.67 0.96 0.96 1.28 1.4 0.0 0.95 98
3722 3722 23S 7 82 104   v4 U:A tSH       Strong C 4 4 3 0.75 0.5 0.96 1.46 0.04 0.96 1.57 1.58 0.0 0.95 98
3729 3729 23S 7 85 97   v4 G:C cWW       Strong C 3 6 3 0.67 0.42 0.93 1.35 0.93 0.97 1.53 1.42 0.0 0.96 99
3736 3736 23S 7 86 96   v4 G:C cWW       Strong C 11 5 3 0.38 0.33 0.82 1.15 0.82 0.99 1.02 1.46 0.0 0.96 99
3743 3743 23S 7 87 95   v4 U:A cWW       Strong C 3 5 3 0.75 0.56 0.96 1.51 0.96 0.97 1.64 1.42 0.0 0.96 99
3750 3750 23S 8 121 130   v4 G:C cWW       Strong C 9 8 6 0.71 0.61 0.9 1.51 0.9 0.98 1.2 1.22 0.0 0.96 99
3757 3757 23S 8 122 129   v4 G:C cWW       Strong C 3 3 3 1.0 1.0 1.0 2.0 1.0 1.0 1.44 1.44 0.0 0.96 99
3764 3764 23S 8 123 128   v4 G:C cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.86 1.86 0.0 0.96 99
3771 3771 23S 9 131 148   v4 A:U cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.12 -0.2 0.02 0.01 100
3778 3778 23S 9 132 147   v4 G:C cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.12 -0.13 0.01 0.01 100
3785 3785 23S 9 133 146   v4 U:A cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.06 0.0 0.01 0.0 100
3792 3792 23S 9 134 145   v4 G:C cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.06 -0.06 0.0 0.01 100
3799 3799 23S 9 135 144   v4 U:A cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.06 -0.06 0.0 0.01 100
3806 3806 23S 9 136 143   v4 G:C cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 -0.06 -0.06 0.0 0.01 100
3813 3813 23S 9 137 142   v4 U:A cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.06 -0.06 0.0 0.01 100
3820 3820 23S 10 150 176   v4 U:A cWW       Strong C 4 5 4 0.89 0.89 0.99 1.88 0.99 0.99 1.49 1.43 0.0 0.96 99
3827 3827 23S 10 151 175   v4 C:G cWW       Strong C 4 3 3 0.86 0.83 0.99 1.82 0.99 0.99 1.59 1.68 0.0 0.96 99
3834 3834 23S 10 152 174   v4 A:U cWW       Strong C 17 15 7 0.44 0.69 0.8 1.49 0.8 0.82 0.12 0.13 0.01 0.95 99
3841 3841 23S 10 153 173   v4 U:A cWW       Strong C 9 12 9 0.86 0.63 0.92 1.55 0.92 0.92 0.56 1.02 0.09 0.87 99
3848 3848 23S 10 154 172   v4 U:A cWW       Strong C 12 12 10 0.83 0.86 0.95 1.81 0.95 0.96 0.86 0.78 0.0 0.96 99
3855 3855 23S 10 155 171   v4 A:U cWW       Strong C 11 11 10 0.91 0.88 0.97 1.84 0.97 0.99 0.83 0.9 0.01 0.95 99
3862 3862 23S 10 156 170   v4 A:U cWW       Strong C 11 13 10 0.83 0.93 0.97 1.89 0.97 0.98 0.41 0.28 0.01 0.94 99
3869 3869 23S 10 157 169   v4 C:G cWW       Strong C 13 10 7 0.61 0.53 0.69 1.22 0.69 0.77 0.52 0.12 0.02 0.93 99
3876 3876 23S 10 158 168   v4 U:G cWW       Weak C 6 13 3 0.32 0.17 0.0 0.17 0.18 0.65 0.17 0.32 0.07 0.85 99
3883 3883 23S 11 183 214   v4 C:G cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
3890 3890 23S 11 184 212   v4 C:G cWW       Strong C 8 8 8 1.0 1.0 1.0 2.0 1.0 1.0 1.32 1.32 0.0 0.97 100
3897 3897 23S 11 185 211   v4 G:C cWW       Strong C 10 9 9 0.95 0.98 0.99 1.97 0.99 1.0 0.91 0.91 0.0 0.97 100
3904 3904 23S 11 186 210   v4 G:C cWW       Strong C 12 11 10 0.87 0.94 0.97 1.91 0.97 0.99 1.0 1.0 0.0 0.97 100
3911 3911 23S 11 187 209   v4 G:C cWW       Strong C 4 3 3 0.86 0.86 0.99 1.85 0.99 0.99 1.57 1.62 0.0 0.97 100
3918 3918 23S 11 188 208   v4 G:C cWW       Strong C 9 8 2 0.23 0.11 0.0 0.11 0.44 0.99 0.96 1.04 0.0 0.97 100
3925 3925 23S 11 194 201   v4 G:C cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
3932 3932 23S 11 195 200   v4 A:U tSH       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
3939 3939 23S 12 224 231   v4 U:A cWW       Strong C 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.76 1.76 0.0 0.97 100
3946 3946 23S 12 225 230   v4 C:G cWW       Strong C 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.71 1.71 0.0 0.97 100
3953 3953 23S 12.1 234 430   v4 U:A tWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
3960 3960 23S 13 235 262   v4 U:A cWW       Strong C 0 2 0 0.0 0.0 0.0 0.0 0.97 1.0 2.0 1.81 0.0 0.97 100
3967 3967 23S 13 236 261   v4 C:G cWW       Strong C 7 8 7 0.93 0.8 0.97 1.77 0.97 0.97 1.47 1.3 0.0 0.97 100
3974 3974 23S 13 237 260   v4 C:G cWW       Strong C 4 3 2 0.57 0.43 0.96 1.39 0.96 0.98 1.71 1.67 0.0 0.97 100
3981 3981 23S 13 238 259   v4 C:G cWW       Strong C 0 1 0 0.0 0.0 0.0 0.0 0.98 0.98 2.0 1.86 0.0 0.97 100
3988 3988 23S 13 239 258   v4 C:G cWW       Significant C 11 19 6 0.4 0.28 0.49 0.77 0.42 0.64 0.48 0.3 0.0 0.97 100
3995 3995 23S 13 245 253   v4 G:C cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
4002 4002 23S 13 246 252   v4 C:G cWW       Strong C 7 3 1 0.2 0.29 0.85 1.14 0.85 1.0 1.26 1.67 0.0 0.97 100
4009 4009 23S 14 265 427   v4 A:U tSS       Strong C 0 1 0 0.0 0.0 0.0 0.0 0.97 0.99 1.86 1.92 0.0 0.97 100
4016 4016 23S 14 266 426   v4 G:C cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.92 1.92 0.0 0.97 100
4023 4023 23S 14 267 425   v4 C:G cWW       Strong C 7 5 5 0.83 0.55 0.95 1.5 0.95 0.96 1.36 1.56 0.0 0.97 100
4030 4030 23S 14 268 424   v4 C:G cWW       Strong C 1 2 0 0.0 0.5 0.98 1.48 0.97 0.97 1.78 1.76 0.0 0.97 100
4037 4037 23S 16 271 366   v4 G:C cWW       Strong C 5 3 0 0.0 0.2 0.0 0.2 0.29 0.43 -0.68 -0.62 0.22 0.07 100
4044 4044 23S 16 272 365   v4 A:U cWW       Strong C 4 2 0 0.0 0.38 0.5 0.88 0.1 0.2 -0.92 -0.64 0.24 0.1 100

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");