Base-pair collective (covariation) scores

47 rows where group_code = "C", molecule = "16S" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, PNuc, Seq

conformation 4

strength 1

  • Weak · 47 ✖

molecule 1

  • 16S · 47 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
33 33 16S 1 13 21   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.95 2.0 1.66 0.0 0.69 126
110 110 16S 3 35 549   v4 G:C cWW       Weak C 0 6 0 0.0 0.0 0.0 0.0 0.87 1.0 2.0 1.43 0.0 0.75 136
124 124 16S 3 37 547   v4 U:A tWS       Weak C 3 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.79 1.94 0.01 0.83 152
131 131 16S 4 39 403   v4 G:C cWW       Weak C 1 3 1 0.5 0.33 0.99 1.32 0.99 0.99 1.89 1.81 0.0 0.85 154
208 208 16S 5 54 357   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
215 215 16S 5 56 356   v4 U:A cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
229 229 16S 5 58 354   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 158
243 243 16S 6 62 105   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.94 0.01 0.89 162
271 271 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak C 4 5 1 0.22 0.08 0.0 0.08 0.05 0.06 1.78 1.65 0.0 0.9 164
782 782 16S 12 292 308   v4 G:C cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.92 167
880 880 16S 14 342 347   v4 C:G cWW       Weak C 7 3 1 0.2 0.18 0.0 0.18 0.94 0.99 1.62 1.85 0.0 0.91 165
915 915 16S 15 375 388   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 164
950 950 16S 16 406 436   v4 G:C cWW       Weak C 2 3 1 0.4 0.33 0.99 1.32 0.99 0.99 1.91 1.85 0.0 0.89 162
978 978 16S 16 416 427   v4 G:U cWW       Weak C 11 7 3 0.33 0.04 0.0 0.04 0.48 0.93 1.2 0.96 0.01 0.89 163
999 999 16S 16 419 424   v4 C:G cWW       Weak C 10 7 4 0.47 0.21 0.88 1.09 0.88 0.99 1.33 1.63 0.0 0.9 165
1258 1258 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak C 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.94 1.89 0.01 0.89 162
1307 1307 16S 20 584 757   v4 G:U cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.01 1.0 1.95 1.95 0.0 0.91 165
1370 1370 16S 21 594 645   v4 U:G cWW       Weak C 15 15 3 0.2 0.34 0.67 1.01 0.67 0.82 0.71 0.53 0.0 0.93 169
1384 1384 16S 21 597 643   v4 G:C cWW       Weak C 3 4 2 0.57 0.64 0.97 1.61 0.97 0.97 1.52 1.62 0.0 0.93 170
1440 1440 16S 21 605 633   v4 U:G cWW       Weak C 2 3 0 0.0 0.36 0.95 1.3 0.05 0.97 1.64 1.42 0.01 0.92 170
1447 1447 16S 21 606 632   v4 G:U No BP       Weak C 15 15 5 0.33 0.58 0.77 1.35 0.77 0.91 0.52 0.46 0.0 0.93 170
1524 1524 16S 22 658 748   v4 C:G cWW       Weak C 14 19 4 0.24 0.22 0.46 0.69 0.34 0.38 0.64 0.23 0.0 0.92 168
1566 1566 16S 22 666 740   v4 G:U cWW       Weak C 3 0 0 0.0 0.0 0.0 0.0 0.05 1.0 1.65 1.94 0.01 0.91 167
1629 1629 16S 23 677 713   v4 U:G cWW       Weak C 4 14 2 0.22 0.07 0.0 0.07 0.78 0.97 1.73 1.14 0.01 0.92 169
1678 1678 16S 23 684 706   v4 U:A cWW       Weak C 3 3 2 0.67 0.27 0.91 1.18 0.89 0.89 1.3 1.67 0.0 0.92 168
1699 1699 16S 23 690 697   v4 G:U tSH       Weak C 3 1 0 0.0 0.06 0.0 0.06 0.1 0.99 1.45 1.95 0.01 0.92 169
1874 1874 16S 26 832 854   v4 G:U cWW       Weak C 9 3 2 0.33 0.03 0.0 0.03 0.17 0.99 1.17 1.72 0.01 0.9 164
1937 1937 16S 26.1 861 868   v4 G:C cWW       Weak C 8 2 2 0.4 0.21 0.93 1.15 0.93 0.93 1.3 1.87 0.02 0.89 164
2028 2028 16S 28 925 1391   v4 G:U cWW       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.85 154
2084 2084 16S 28 935 1380   v4 A:U cWW       Weak C 1 2 0 0.0 0.0 0.0 0.0 0.98 0.99 1.95 1.82 0.01 0.84 154
2119 2119 16S 29 942 1341   v4 G:U cWW       Weak C 5 1 1 0.33 0.38 0.97 1.34 0.02 0.97 1.38 1.87 0.03 0.85 160
2175 2175 16S 30 950 1231   v4 U:G cWW       Weak C 2 3 0 0.0 0.0 0.0 0.0 0.04 1.0 1.87 1.75 0.01 0.87 160
2217 2217 16S 31 960 975   v4 U:A No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.8 0.0 0.89 162
2224 2224 16S 31 961 974   v4 U:A No BP       Weak C 1 1 0 0.0 0.0 0.0 0.0 0.97 0.97 1.83 1.95 0.0 0.9 163
2455 2455 16S 34 1052 1206   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.95 0.0 0.9 163
2462 2462 16S 34 1053 1205   v4 G:U No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 163
2483 2483 16S 34 1058 1199   v4 G:U cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.93 2.0 0.01 0.88 161
2735 2735 16S 40 1158 1178   v4 C:G No BP       Weak C 0 2 0 0.0 0.11 0.0 0.11 0.95 0.98 1.38 1.71 0.03 0.89 167
2742 2742 16S 40 1159 1177   v4 U:G No BP       Weak C 7 3 2 0.4 0.17 0.0 0.17 0.04 0.97 1.39 1.74 0.02 0.9 167
2854 2854 16S 41 1255 1282   v4 G:C cWW       Weak C 6 5 2 0.36 0.53 0.92 1.45 0.92 0.96 1.25 1.11 0.0 0.92 168
3022 3022 16S 44 1401 1501   v4 G:C cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.78 142
3155 3155 16S 44 1425 1475   v4 U:G cWW       Weak C 13 16 4 0.28 0.57 0.79 1.37 0.79 0.95 0.69 0.91 0.01 0.82 150
3197 3197 16S 44 1435 1466   v4 G:C cWW       Weak C 9 9 2 0.22 0.4 0.85 1.24 0.85 0.85 0.97 1.1 0.01 0.83 152
3239 3239 16S 44 1442 1460   v4 G:C cWW       Weak C 0 14 0 0.0 0.69 0.89 1.57 0.89 0.92 0.32 0.23 0.01 0.78 154
3281 3281 16S 45 1506 1529   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59 108
3316 3316 16S 45 1511 1524   v4 G:C cWW       Weak C 2 7 1 0.22 0.08 0.0 0.08 0.78 0.98 1.76 1.06 0.0 0.57 103
3323 3323 16S 45 1512 1523   v4 U:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.63 114

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");