Base-pair collective (covariation) scores

61 rows where group_code = "B", molecule = "23S" and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, DfDel, PNuc, Seq

conformation 3

strength 1

  • Weak · 61 ✖

molecule 1

  • 23S · 61 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3398 3398 23S 1 8 2895   v4 C:G cWW       Weak B 11 13 3 0.25 0.57 0.72 1.29 0.72 0.99 0.77 0.73 0.0 0.54 177
3664 3664 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak B 2 1 0 0.0 0.29 0.96 1.25 0.96 0.98 1.63 1.86 0.0 0.79 257
3874 3874 23S 10 158 168   v4 U:G cWW       Weak B 5 3 1 0.25 0.11 0.0 0.11 0.03 0.99 1.15 1.28 0.0 0.75 270
4056 4056 23S 16 274 363   v4 C:G cWW       Weak B 8 2 1 0.2 0.88 0.92 1.79 0.92 0.98 -0.36 -0.38 0.01 0.73 276
4063 4063 23S 18 281 359   v4 C:G cWW       Weak B 15 22 5 0.27 0.33 0.49 0.82 0.38 0.58 0.08 0.03 0.01 0.83 276
4084 4084 23S 18 284 356   v4 U:G cWW       Weak B 29 23 11 0.42 0.44 0.63 1.07 0.63 0.7 0.04 -0.07 0.02 0.82 277
4147 4147 23S 18 293 347   v4 U:A cWW       Weak B 11 9 2 0.2 0.12 0.0 0.12 0.86 0.91 1.2 1.53 0.01 0.84 278
4245 4245 23S 20 327 335   v4 G:C cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.96 0.0 0.86 281
4273 4273 23S 21 378 396   v4 C:G cWW       Weak B 3 1 1 0.5 0.82 0.99 1.81 0.99 1.0 1.74 1.79 0.0 0.86 280
4301 4301 23S 21 382 392   v4 A:U cWW       Weak B 12 11 4 0.35 0.2 0.65 0.85 0.65 0.79 1.19 1.07 0.0 0.86 281
4462 4462 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak B 1 3 0 0.0 0.33 0.99 1.32 0.0 0.01 1.87 1.85 0.0 0.86 281
4518 4518 23S 25.1 564 577   v4 C:G cWW       Weak B 0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.93 0.0 0.86 282
4658 4658 23S 27 600 657   v4 G:U cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.86 282
4756 4756 23S 31 641 647   v4 U:G cWW       Weak B 8 1 0 0.0 0.0 0.0 0.0 0.15 1.0 1.41 1.97 0.0 0.86 281
4763 4763 23S 32 671 809   v4 C:G cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.95 0.0 0.74 242
4826 4826 23S 33 687 775   v4 C:G No BP       Weak B 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.93 0.0 0.86 282
4882 4882 23S 33 695 767   v4 G:U cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.86 282
4931 4931 23S 34 703 729   v4 U:G No BP       Weak B 1 0 0 0.0 0.0 0.0 0.0 0.02 1.0 1.87 2.0 0.0 0.86 282
4938 4938 23S 34 707 724   v4 G:U cWW       Weak B 4 1 0 0.0 0.06 0.0 0.06 0.05 1.0 1.69 1.97 0.0 0.86 282
5134 5134 23S 37 826 831   v4 U:G cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.95 2.0 0.0 0.74 243
5708 5708 23S 42 1051 1108   v4 G:U cWW       Weak B 12 2 1 0.14 0.02 0.0 0.02 0.59 0.99 0.98 1.9 0.0 0.74 241
5953 5953 23S 46 1215 1234   v4 G:U cWW       Weak B 1 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.93 2.0 0.0 0.82 266
6415 6415 23S 54 1415 1587   v4 U:G cWW       Weak B 16 10 4 0.31 0.24 0.52 0.76 0.3 0.7 -0.07 0.15 0.0 0.68 263
6513 6513 23S 56 1436 1556   v4 G:C cWW       Weak B 8 17 4 0.32 0.16 0.0 0.16 0.71 0.92 1.52 0.65 0.0 0.81 264
6527 6527 23S 56 1440 1551   v4 U:A cWW       Weak B 22 21 6 0.28 0.27 0.64 0.92 0.38 0.89 0.16 0.67 0.03 0.78 264
6562 6562 23S 57 1445 1466   v4 G:U cWW       Weak B 15 11 7 0.54 0.29 0.72 1.02 0.13 0.84 0.23 0.7 0.02 0.75 264
6611 6611 23S 58 1468 1524   v4 U:G cWW       Weak B 23 16 5 0.26 0.28 0.52 0.8 0.52 0.83 -0.17 0.17 0.0 0.74 264
6646 6646 23S 58 1478 1513   v4 G:U cWW       Weak B 6 16 4 0.36 0.14 0.0 0.14 0.34 0.9 0.85 0.06 0.01 0.73 263
6667 6667 23S 58 1481 1510   v4 U:G cWW       Weak B 8 13 3 0.29 0.6 0.77 1.37 0.55 0.98 -0.44 -0.32 0.03 0.68 264
6681 6681 23S 58 1483 1506   v4 G:U cWW       Weak B 17 24 8 0.39 0.44 0.79 1.23 0.79 0.9 0.23 -0.09 0.04 0.68 264
6989 6989 23S 63 1707 1751   v4 G:U cWW       Weak B 9 13 4 0.36 0.27 0.59 0.86 0.59 0.98 1.12 0.79 0.01 0.79 259
7129 7129 23S 64 1770 1982   v4 G:U cWW       Weak B 4 13 0 0.0 0.16 0.0 0.16 0.32 0.97 1.18 0.86 0.0 0.72 236
7150 7150 23S 65 1775 1789   v4 U:A tHS       Weak B 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 2.0 0.0 0.8 261
7227 7227 23S 66 1799 1820   v4 G:U No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.8 262
7241 7241 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak B 0 3 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.85 0.0 0.79 259
7297 7297 23S 68 1835 1905   v4 G:C cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 2.0 0.0 0.74 243
7325 7325 23S 68 1841 1901   v4 U:A cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.75 244
7332 7332 23S 68 1842 1898   v4 G:U cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 2.0 0.0 0.75 244
7381 7381 23S 68 1851 1891   v4 U:G cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 2.0 0.0 0.79 259
7472 7472 23S 69 1907 1923   v4 G:U cWW       Weak B 0 2 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.92 0.0 0.74 242
7500 7500 23S 69 1911 1919   v4 U:A No BP       Weak B 2 0 0 0.0 0.0 0.0 0.0 0.98 0.98 1.83 1.95 0.0 0.74 244
7521 7521 23S 71 1945 1961   v4 G:C cWW       Weak B 2 1 1 0.67 0.33 0.99 1.32 0.99 0.99 1.84 1.96 0.0 0.74 240
7535 7535 23S 71 1947 1959   v4 C:G cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.95 0.0 0.73 240
7675 7675 23S 73 2056 2612   v4 G:C cWW       Weak B 2 2 0 0.0 0.67 0.99 1.66 0.97 0.97 1.83 1.88 0.0 0.72 236
7696 7696 23S 74 2065 2445   v4 C:G cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.95 0.0 0.73 239
7759 7759 23S 74 2075 2434   v4 U:A No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
7766 7766 23S 75 2077 2243   v4 A:U cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 240
7892 7892 23S 76 2100 2189   v4 G:U cWW       Weak B 4 8 1 0.17 0.52 0.9 1.42 0.1 1.0 1.39 1.1 0.0 0.74 241
7955 7955 23S 76 2109 2180   v4 U:U cWW   3°: base pair   Weak B 1 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.96 2.0 0.0 0.74 241
7990 7990 23S 77 2120 2178   v4 G:C cWW       Weak B 0 4 0 0.0 0.02 0.0 0.02 0.81 1.0 1.96 1.25 0.0 0.74 241
8046 8046 23S 78 2136 2155   v4 G:U cWW       Weak B 24 21 7 0.31 0.24 0.6 0.84 0.46 0.93 0.42 0.93 0.0 0.74 241
8095 8095 23S 78 2143 2148   v4 C:G cWW       Weak B 4 1 0 0.0 0.0 0.0 0.0 0.97 1.0 1.81 1.81 0.01 0.73 242
8193 8193 23S 80 2249 2255   v4 U:G No BP       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.95 0.0 0.73 238
8277 8277 23S 83 2291 2341   v4 U:G cWW       Weak B 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.81 0.01 0.73 241
8389 8389 23S 85.1 2328 2387   v4 A:U cWW   3°: pseudoknot   Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
8438 8438 23S 86 2351 2366   v4 G:A cWW   3°: base pair   Weak B 7 4 1 0.18 0.03 0.0 0.03 0.01 0.02 1.44 1.75 0.0 0.74 242
8564 8564 23S 89 2455 2496   v4 G:C cWW       Weak B 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 1.91 1.93 0.0 0.74 241
8592 8592 23S 89 2460 2490   v4 U:G cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.74 241
8851 8851 23S 93 2592 2601   v4 G:C cWW       Weak B 0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.96 0.0 0.73 237
9005 9005 23S 95 2652 2668   v4 C:G cWW       Weak B 12 4 2 0.25 0.01 0.0 0.01 0.59 0.97 1.04 1.72 0.0 0.73 237
9110 9110 23S 96 2696 2711   v4 U:A cWW       Weak B 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.88 1.93 0.0 0.73 237

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");