Base-pair collective (covariation) scores

47 rows where group_code = "B", molecule = "16S" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc

conformation 4

strength 1

  • Weak · 47 ✖

molecule 1

  • 16S · 47 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
31 31 16S 1 13 21   v4 U:G No BP       Weak B 4 6 1 0.2 0.05 0.0 0.05 0.0 0.99 1.94 1.89 0.0 0.36 2128
108 108 16S 3 35 549   v4 G:C cWW       Weak B 10 2 2 0.33 0.11 0.0 0.11 0.99 0.99 1.91 1.94 0.0 0.59 3467
122 122 16S 3 37 547   v4 U:A tWS       Weak B 4 5 0 0.0 0.02 0.0 0.02 0.99 0.99 1.94 1.91 0.0 0.61 3570
129 129 16S 4 39 403   v4 G:C cWW       Weak B 18 24 5 0.24 0.44 0.98 1.42 0.98 0.99 1.8 1.75 0.0 0.65 3830
206 206 16S 5 54 357   v4 C:G cWW       Weak B 5 2 1 0.29 0.52 1.0 1.51 1.0 1.0 1.94 1.94 0.0 0.71 4138
213 213 16S 5 56 356   v4 U:A cWW       Weak B 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.99 0.0 0.7 4124
227 227 16S 5 58 354   v4 C:G cWW       Weak B 5 3 0 0.0 0.0 0.0 0.0 0.99 0.99 1.96 1.94 0.0 0.72 4221
241 241 16S 6 62 105   v4 U:G cWW       Weak B 4 12 1 0.12 0.02 0.0 0.02 0.01 0.99 1.95 1.9 0.0 0.75 4404
269 269 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak B 15 18 1 0.06 0.13 0.0 0.13 0.01 0.01 1.86 1.76 0.0 0.75 4427
780 780 16S 12 292 308   v4 G:C cWW       Weak B 4 4 1 0.25 0.33 0.99 1.33 0.99 1.0 1.93 1.95 0.0 0.84 4920
878 878 16S 14 342 347   v4 C:G cWW       Weak B 8 0 0 0.0 0.04 0.0 0.04 0.99 1.0 1.82 1.97 0.01 0.82 4889
913 913 16S 15 375 388   v4 U:G No BP       Weak B 2 17 0 0.0 0.0 0.0 0.0 0.0 0.99 1.97 1.89 0.0 0.79 4613
948 948 16S 16 406 436   v4 G:C cWW       Weak B 3 9 1 0.17 0.05 0.0 0.05 0.99 1.0 1.97 1.93 0.0 0.83 4861
976 976 16S 16 416 427   v4 G:U cWW       Weak B 26 58 3 0.07 0.05 0.0 0.05 0.17 0.97 1.73 1.3 0.0 0.85 4982
997 997 16S 16 419 424   v4 C:G cWW       Weak B 86 23 10 0.18 0.06 0.0 0.06 0.82 1.0 1.0 1.89 0.03 0.82 4957
1256 1256 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak B 2 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.98 0.0 0.78 4553
1305 1305 16S 20 584 757   v4 G:U cWW       Weak B 1 4 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.98 0.0 0.81 4742
1368 1368 16S 21 594 645   v4 U:G cWW       Weak B 110 74 21 0.23 0.07 0.0 0.07 0.38 0.96 0.84 1.32 0.0 0.81 4747
1382 1382 16S 21 597 643   v4 G:C cWW       Weak B 1 7 0 0.0 0.03 0.0 0.03 0.99 0.99 1.96 1.94 0.0 0.81 4778
1438 1438 16S 21 605 633   v4 U:G cWW       Weak B 2 38 3 0.15 0.01 0.0 0.01 0.02 0.91 1.95 1.3 0.01 0.81 4799
1445 1445 16S 21 606 632   v4 G:U No BP       Weak B 64 114 12 0.14 0.1 0.0 0.1 0.07 0.79 1.25 0.72 0.01 0.8 4794
1522 1522 16S 22 658 748   v4 C:G cWW       Weak B 184 178 50 0.28 0.37 0.5 0.88 0.42 0.51 0.12 0.28 0.0 0.8 4701
1564 1564 16S 22 666 740   v4 G:U cWW       Weak B 23 19 2 0.1 0.14 0.0 0.14 0.04 1.0 1.74 1.87 0.0 0.82 4805
1627 1627 16S 23 677 713   v4 U:G cWW       Weak B 22 64 11 0.26 0.2 0.78 0.98 0.22 0.94 1.59 1.17 0.0 0.83 4843
1676 1676 16S 23 684 706   v4 U:A cWW       Weak B 13 5 2 0.22 0.01 0.0 0.01 0.98 0.98 1.86 1.97 0.0 0.83 4857
1697 1697 16S 23 690 697   v4 G:U tSH       Weak B 18 2 0 0.0 0.0 0.0 0.0 0.08 1.0 1.56 1.99 0.0 0.83 4853
1872 1872 16S 26 832 854   v4 G:U cWW       Weak B 33 57 7 0.16 0.09 0.0 0.09 0.13 0.97 1.63 1.3 0.0 0.81 4735
1935 1935 16S 26.1 861 868   v4 G:C cWW       Weak B 60 35 6 0.13 0.15 0.0 0.15 0.85 0.93 1.27 1.42 0.02 0.74 4493
2026 2026 16S 28 925 1391   v4 G:U cWW       Weak B 5 5 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.96 0.0 0.63 3712
2082 2082 16S 28 935 1380   v4 A:U cWW       Weak B 3 3 0 0.0 0.0 0.0 0.0 1.0 1.0 1.94 1.97 0.0 0.68 3978
2117 2117 16S 29 942 1341   v4 G:U cWW       Weak B 6 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.8 1.98 0.01 0.7 4157
2173 2173 16S 30 950 1231   v4 U:G cWW       Weak B 5 11 1 0.12 0.01 0.0 0.01 0.19 1.0 1.95 1.3 0.0 0.71 4184
2215 2215 16S 31 960 975   v4 U:A No BP       Weak B 1 10 0 0.0 0.0 0.0 0.0 0.92 1.0 1.97 1.59 0.0 0.74 4347
2222 2222 16S 31 961 974   v4 U:A No BP       Weak B 1 28 0 0.0 0.01 0.0 0.01 0.87 0.87 1.95 1.32 0.0 0.74 4330
2453 2453 16S 34 1052 1206   v4 U:G cWW       Weak B 5 6 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.95 0.0 0.72 4234
2460 2460 16S 34 1053 1205   v4 G:U No BP       Weak B 2 12 0 0.0 0.01 0.0 0.01 0.04 1.0 1.95 1.75 0.0 0.75 4383
2481 2481 16S 34 1058 1199   v4 G:U cWW       Weak B 1 2 0 0.0 0.04 0.0 0.04 0.0 1.0 1.94 1.98 0.0 0.75 4395
2733 2733 16S 40 1158 1178   v4 C:G No BP       Weak B 1 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.99 0.0 0.79 4605
2740 2740 16S 40 1159 1177   v4 U:G No BP       Weak B 43 2 1 0.04 0.0 0.0 0.0 0.06 0.99 1.63 1.97 0.0 0.78 4600
2852 2852 16S 41 1255 1282   v4 G:C cWW       Weak B 2 9 0 0.0 0.0 0.0 0.0 0.99 1.0 1.97 1.92 0.0 0.8 4668
3020 3020 16S 44 1401 1501   v4 G:C cWW       Weak B 6 2 0 0.0 0.0 0.0 0.0 0.99 0.99 1.94 1.96 0.0 0.31 1817
3153 3153 16S 44 1425 1475   v4 U:G cWW       Weak B 59 42 5 0.1 0.1 0.0 0.1 0.09 0.45 0.51 1.29 0.0 0.56 3285
3195 3195 16S 44 1435 1466   v4 G:C cWW       Weak B 29 44 10 0.27 0.12 0.0 0.12 0.92 0.97 1.62 1.6 0.0 0.58 3404
3237 3237 16S 44 1442 1460   v4 G:C cWW       Weak B 87 59 10 0.14 0.08 0.0 0.08 0.35 0.36 0.1 0.34 0.0 0.56 3464
3279 3279 16S 45 1506 1529   v4 U:G No BP       Weak B 3 5 0 0.0 0.08 0.0 0.08 0.0 0.98 1.92 1.86 0.0 0.12 718
3314 3314 16S 45 1511 1524   v4 G:C cWW       Weak B 6 17 1 0.09 0.17 0.0 0.17 0.92 0.98 1.39 1.19 0.01 0.14 917
3321 3321 16S 45 1512 1523   v4 U:G cWW       Weak B 6 9 2 0.27 0.08 0.0 0.08 0.0 0.98 1.89 1.78 0.0 0.16 948

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");