Base-pair collective (covariation) scores

425 rows where group_code = "B", molecule = "16S" and strength = "Strong" sorted by position_1

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conformation 6

strength 1

  • Strong · 425 ✖

molecule 1

  • 16S · 425 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3 3 16S 1 9 25   v4 G:C cWW       Strong B 13 7 1 0.1 0.02 0.0 0.02 0.97 0.98 1.86 1.85 0.0 0.33 1946
10 10 16S 1 10 24   v4 A:U cWW       Strong B 14 8 1 0.09 0.01 0.0 0.01 0.96 0.99 1.73 1.9 0.0 0.34 2016
17 17 16S 1 11 23   v4 G:C cWW       Strong B 6 4 1 0.2 0.27 0.99 1.26 0.99 0.99 1.91 1.94 0.0 0.35 2053
24 24 16S 1 12 22   v4 U:G cWW       Strong B 6 6 1 0.17 0.08 0.0 0.08 0.01 0.99 1.88 1.91 0.0 0.36 2131
38 38 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong B 1 3 0 0.0 0.07 0.0 0.07 0.99 0.99 1.95 1.96 0.0 0.37 2163
45 45 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong B 24 18 10 0.48 0.64 0.98 1.62 0.98 0.99 1.7 1.75 0.0 0.37 2163
52 52 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong B 32 13 1 0.04 0.72 0.94 1.66 0.94 0.95 1.29 1.34 0.0 0.37 2190
59 59 16S 3 27 556   v4 G:C cWW       Strong B 3 1 1 0.5 0.0 0.0 0.0 0.99 0.99 1.92 1.98 0.0 0.44 2600
66 66 16S 3 28 555   v4 A:U cWW       Strong B 12 12 5 0.42 0.97 0.99 1.96 0.99 1.0 0.95 0.97 0.0 0.53 3080
73 73 16S 3 29 554   v4 U:A cWW       Strong B 28 31 19 0.64 0.97 0.99 1.96 0.99 0.99 0.76 0.79 0.0 0.54 3182
80 80 16S 3 30 553   v4 U:A cWW       Strong B 41 47 27 0.61 0.95 0.98 1.93 0.98 0.99 0.94 0.96 0.0 0.55 3238
87 87 16S 3 32 552   v4 A:U cWW       Strong B 6 7 1 0.15 0.14 0.0 0.14 0.99 0.99 1.89 1.92 0.0 0.57 3333
94 94 16S 3 33 551   v4 A:U cWW       Strong B 4 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.57 3361
101 101 16S 3 34 550   v4 C:G cWW       Strong B 8 8 3 0.38 0.29 0.99 1.28 0.99 0.99 1.89 1.92 0.0 0.59 3444
115 115 16S 3 36 548   v4 C:G cWW       Strong B 13 14 6 0.44 0.69 0.99 1.68 0.99 0.99 1.75 1.79 0.0 0.6 3539
136 136 16S 4 40 402   v4 C:G cWW       Strong B 12 6 4 0.44 0.5 0.99 1.49 0.99 0.99 1.89 1.88 0.0 0.67 3915
143 143 16S 4 41 401   v4 G:C cWW       Strong B 16 18 12 0.71 0.86 0.99 1.85 0.99 1.0 1.65 1.66 0.0 0.66 3896
150 150 16S 4 42 400   v4 G:C cWW       Strong B 15 12 6 0.44 0.78 0.99 1.77 0.99 1.0 1.78 1.82 0.0 0.67 3959
157 157 16S 4 43 399   v4 C:G cWW       Strong B 48 57 31 0.59 0.78 0.97 1.75 0.97 0.98 1.4 1.38 0.0 0.67 3943
164 164 16S 4 44 398   v4 A:U cWW       Strong B 34 39 29 0.8 0.95 0.98 1.93 0.98 0.98 0.96 0.9 0.0 0.68 4002
171 171 16S 4 45 396   v4 G:C cWW       Strong B 37 65 19 0.37 0.53 0.7 1.24 0.7 0.96 0.78 0.34 0.0 0.68 3969
178 178 16S 4 46 395   v4 G:C cWW       Strong B 8 3 1 0.18 0.19 0.0 0.19 0.99 0.99 1.93 1.96 0.0 0.69 4020
185 185 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong B 6 3 3 0.67 0.57 0.97 1.54 0.97 0.97 1.55 1.67 0.0 0.69 4038
192 192 16S 5 52 359   v4 C:G cWW       Strong B 37 32 25 0.72 0.92 0.98 1.89 0.98 0.99 0.88 0.89 0.0 0.7 4113
199 199 16S 5 53 358   v4 A:U cWW       Strong B 16 9 6 0.48 0.65 0.98 1.63 0.98 1.0 1.66 1.75 0.0 0.7 4095
220 220 16S 5 57 355   v4 G:C cWW       Strong B 11 3 0 0.0 0.0 0.0 0.0 0.99 0.99 1.91 1.97 0.0 0.71 4194
234 234 16S 6 61 106   v4 G:C cWW       Strong B 9 10 2 0.21 0.29 0.99 1.29 0.99 0.99 1.91 1.9 0.0 0.75 4392
248 248 16S 6 63 104   v4 C:G cWW       Strong B 14 12 8 0.61 0.65 0.99 1.64 0.99 1.0 1.86 1.84 0.0 0.75 4402
255 255 16S 6 66 103   v4 A:U cWW       Strong B 85 80 61 0.74 0.96 0.98 1.95 0.98 0.99 0.94 0.94 0.0 0.75 4409
262 262 16S 6 67 102   v4 C:G cWW       Strong B 28 35 18 0.57 0.73 0.99 1.71 0.99 0.99 1.69 1.65 0.0 0.76 4438
276 276 16S 6 69 99   v4 G:C cWW       Strong B 99 116 40 0.37 0.61 0.8 1.41 0.8 0.95 0.2 -0.02 0.01 0.68 4378
283 283 16S 6 70 98   v4 U:A cWW       Strong B 158 157 96 0.61 0.81 0.88 1.69 0.88 0.97 -0.42 -0.35 0.01 0.67 4404
290 290 16S 6 73 97   v4 C:G cWW       Strong B 54 46 23 0.46 0.85 0.95 1.8 0.95 0.98 -0.68 -0.64 0.01 0.34 4435
297 297 16S 6 74 96   v4 A:U cWW       Strong B 65 69 36 0.54 0.15 0.0 0.15 0.29 0.3 -0.78 -0.9 0.0 0.0 4427
304 304 16S 6 75 95   v4 G:C cWW       Strong B 87 83 54 0.64 0.55 0.7 1.25 0.7 0.91 -0.83 -0.93 0.01 0.28 4428
311 311 16S 6 76 93   v4 G:U cWW       Strong B 114 119 41 0.35 0.46 0.58 1.04 0.58 0.77 -0.91 -0.89 0.0 0.27 4456
318 318 16S 6 77 92   v4 A:U cWW       Strong B 146 151 47 0.32 0.53 0.65 1.18 0.65 0.86 -0.95 -0.95 0.01 0.35 4420
325 325 16S 6 78 91   v4 A:U cWW       Strong B 184 170 79 0.45 0.68 0.77 1.46 0.77 0.91 -0.94 -0.95 0.0 0.44 4430
332 332 16S 6 79 90   v4 G:C cWW       Strong B 218 220 116 0.53 0.7 0.78 1.48 0.78 0.96 -0.7 -0.74 0.01 0.57 4439
339 339 16S 6 80 89   v4 A:U cWW       Strong B 254 264 172 0.66 0.85 0.9 1.75 0.9 0.97 -0.33 -0.38 0.0 0.68 4409
346 346 16S 6 81 88   v4 A:U cWW       Strong B 230 231 182 0.79 0.92 0.95 1.87 0.95 0.99 -0.06 0.04 0.01 0.74 4440
353 353 16S 6 82 87   v4 G:C cWW       Strong B 193 158 122 0.69 0.91 0.95 1.85 0.95 0.99 0.21 0.37 0.0 0.75 4468
360 360 16S 6.1 113 314   v4 G:C cWW       Strong B 5 4 4 0.89 0.83 1.0 1.83 1.0 1.0 1.9 1.92 0.0 0.81 4720
367 367 16S 6.1 114 313   v4 U:A cWW       Strong B 5 6 6 1.0 0.83 1.0 1.83 1.0 1.0 1.86 1.88 0.0 0.8 4704
374 374 16S 6.1 115 312   v4 G:C cWW       Strong B 8 11 7 0.74 0.79 1.0 1.78 1.0 1.0 1.85 1.84 0.0 0.79 4659
381 381 16S 7 122 239   v4 G:U cWW       Strong B 85 75 16 0.2 0.67 0.83 1.49 0.12 0.61 0.95 0.76 0.0 0.8 4717
388 388 16S 7 123 238   v4 U:A cWW       Strong B 29 33 27 0.87 0.93 0.99 1.92 0.99 1.0 1.55 1.58 0.0 0.81 4769
395 395 16S 7 124 237   v4 C:G cWW       Strong B 32 38 33 0.94 0.98 0.99 1.97 0.99 1.0 0.83 0.84 0.0 0.81 4767
402 402 16S 7 125 236   v4 U:A cWW       Strong B 6 42 3 0.12 0.01 0.0 0.01 0.26 1.0 1.92 1.12 0.0 0.8 4679
409 409 16S 7 126 235   v4 G:C cWW       Strong B 75 74 54 0.72 0.9 0.96 1.86 0.96 0.99 0.75 0.74 0.0 0.81 4751
416 416 16S 7 127 234   v4 G:C cWW       Strong B 49 72 43 0.71 0.85 0.97 1.82 0.97 1.0 1.0 0.91 0.0 0.81 4777
423 423 16S 7 128 233   v4 G:C cWW       Strong B 62 63 48 0.77 0.84 0.98 1.82 0.98 0.99 1.2 1.22 0.0 0.81 4770
430 430 16S 7 129 232   v4 A:G cWW   3°: base pair   Strong B 113 88 42 0.42 0.21 0.52 0.73 0.32 0.58 0.24 1.08 0.0 0.8 4743
437 437 16S 7 131 231   v4 A:U cWW       Strong B 96 104 85 0.85 0.89 0.94 1.83 0.94 0.99 0.77 0.76 0.0 0.81 4782
444 444 16S 7 132 230   v4 C:G cWW       Strong B 67 68 60 0.89 0.96 0.99 1.95 0.99 1.0 0.9 0.9 0.0 0.81 4755
451 451 16S 7 136 227   v4 C:G cWW       Strong B 6 7 5 0.77 0.5 0.99 1.49 0.99 1.0 1.91 1.87 0.0 0.81 4743
458 458 16S 7 137 226   v4 U:G cWW       Strong B 155 154 116 0.75 0.89 0.95 1.84 0.95 0.99 0.77 0.79 0.0 0.8 4737
465 465 16S 7 138 225   v4 G:C cWW       Strong B 220 243 117 0.51 0.72 0.82 1.54 0.82 0.94 0.26 0.08 0.0 0.8 4733
472 472 16S 7 139 224   v4 A:U cWW       Strong B 247 243 116 0.47 0.57 0.7 1.27 0.7 0.94 0.16 0.18 0.0 0.81 4768
479 479 16S 7 140 223   v4 U:A cWW       Strong B 237 240 146 0.61 0.77 0.85 1.62 0.85 0.98 0.09 0.14 0.0 0.81 4760
486 486 16S 7 141 222   v4 G:C cWW       Strong B 122 119 102 0.85 0.87 0.95 1.83 0.95 0.99 0.57 0.61 0.0 0.81 4787
493 493 16S 7 142 221   v4 G:C cWW       Strong B 66 75 57 0.81 0.95 0.98 1.94 0.98 0.99 0.87 0.82 0.0 0.82 4814
500 500 16S 8 144 178   v4 G:C cWW       Strong B 163 146 89 0.58 0.74 0.84 1.58 0.84 0.99 0.1 0.23 0.0 0.81 4750
507 507 16S 8 145 177   v4 G:G cWW   3°: base pair   Strong B 147 99 32 0.26 0.09 0.0 0.09 0.36 0.58 0.3 1.23 0.0 0.82 4809
514 514 16S 8 146 176   v4 G:C cWW       Strong B 34 56 23 0.51 0.46 0.96 1.42 0.96 1.0 1.67 1.5 0.0 0.82 4836
521 521 16S 8 147 175   v4 G:C cWW       Strong B 7 10 3 0.35 0.62 1.0 1.61 1.0 1.0 1.91 1.89 0.0 0.82 4845
528 528 16S 8 152 169   v4 A:C tHW   3°: base pair   Strong B 72 84 46 0.59 0.54 0.91 1.45 0.01 0.11 1.2 1.01 0.0 0.83 4869
535 535 16S 8 153 168   v4 C:G cWW       Strong B 33 68 17 0.34 0.49 0.85 1.34 0.72 0.85 1.28 0.78 0.0 0.82 4851
542 542 16S 8 154 167   v4 U:A cWW       Strong B 184 188 111 0.6 0.81 0.88 1.69 0.88 0.97 0.12 0.18 0.0 0.82 4802
549 549 16S 8 155 166   v4 A:U cWW       Strong B 203 191 116 0.59 0.83 0.9 1.73 0.9 0.98 0.08 0.16 0.0 0.82 4805
556 556 16S 8 156 165   v4 C:G cWW       Strong B 220 191 109 0.53 0.67 0.78 1.44 0.78 0.99 0.08 0.22 0.0 0.81 4805
563 563 16S 8 157 164   v4 U:G cWW       Strong B 171 180 80 0.46 0.44 0.62 1.06 0.37 0.99 0.46 0.17 0.0 0.82 4852
570 570 16S 8 158 163   v4 G:C cWW       Strong B 102 101 85 0.84 0.95 0.99 1.94 0.99 0.99 0.75 0.78 0.0 0.82 4850
577 577 16S 9 184 193   v4 G:C cWW       Strong B 271 262 137 0.51 0.81 0.87 1.68 0.87 0.95 -0.07 0.05 0.0 0.81 4800
584 584 16S 9 185 192   v4 U:A cWW       Strong B 246 231 126 0.53 0.79 0.88 1.67 0.88 0.97 0.23 0.33 0.01 0.81 4829
591 591 16S 9 186 191   v4 C:G cWW       Strong B 157 114 70 0.52 0.62 0.91 1.52 0.91 0.98 0.73 1.09 0.01 0.81 4806
598 598 16S 10 198 219   v4 G:U cWW       Strong B 53 120 27 0.31 0.3 0.87 1.18 0.87 0.99 1.57 1.18 0.0 0.83 4898
605 605 16S 10 199 218   v4 A:U cWW       Strong B 191 162 101 0.57 0.8 0.88 1.68 0.88 0.98 -0.25 -0.16 0.0 0.76 4880
612 612 16S 10 200 217   v4 G:C cWW       Strong B 114 119 80 0.69 0.87 0.91 1.79 0.91 0.97 -0.96 -0.96 0.0 0.42 4854
619 619 16S 10 201 216   v4 G:U cWW       Strong B 38 38 17 0.45 0.42 0.82 1.25 0.27 0.97 -0.51 -0.66 0.0 0.37 4903
626 626 16S 10 202 215   v4 G:C cWW       Strong B 22 19 14 0.68 0.92 0.98 1.9 0.98 0.99 -0.5 -0.54 0.0 0.35 4910
633 633 16S 10 203 214   v4 G:C cWW       Strong B 44 26 16 0.46 0.72 0.89 1.61 0.89 0.98 -0.75 -0.68 0.0 0.3 4926
640 640 16S 10 206 213   v4 C:G cWW       Strong B 37 38 32 0.85 0.94 0.97 1.91 0.97 0.99 -0.62 -0.63 0.0 0.22 4935
647 647 16S 10 207 212   v4 C:G cWW       Strong B 36 30 20 0.61 0.72 0.94 1.66 0.94 1.0 -0.58 -0.55 0.0 0.22 4937
654 654 16S 11 240 286   v4 G:C cWW       Strong B 93 99 87 0.91 0.97 0.99 1.96 0.99 0.99 0.66 0.66 0.0 0.84 4956
661 661 16S 11 241 285   v4 G:C cWW       Strong B 128 117 111 0.91 0.94 0.96 1.9 0.96 0.99 0.15 0.12 0.0 0.85 4993
668 668 16S 11 242 284   v4 G:C cWW       Strong B 72 53 44 0.7 0.46 0.72 1.18 0.76 0.99 0.47 0.68 0.0 0.85 4979
675 675 16S 11 245 283   v4 U:U cWW   3°: base pair   Strong B 24 24 21 0.88 0.98 1.0 1.98 0.0 0.0 1.17 1.16 0.0 0.85 4985
682 682 16S 11 247 277   v4 G:C cWW       Strong B 5 8 4 0.61 0.24 0.99 1.23 0.99 1.0 1.96 1.93 0.0 0.85 5011
689 689 16S 11 248 276   v4 C:G cWW       Strong B 97 93 71 0.75 0.91 0.98 1.89 0.98 0.99 1.12 1.12 0.0 0.85 5006
696 696 16S 11 249 275   v4 U:G cWW       Strong B 11 12 8 0.7 0.75 1.0 1.74 0.0 0.99 1.89 1.88 0.0 0.86 5017
703 703 16S 11 252 274   v4 U:A cWW       Strong B 25 25 24 0.96 0.9 1.0 1.9 1.0 1.0 1.86 1.85 0.0 0.85 5006
710 710 16S 11 253 273   v4 A:U cWW       Strong B 32 37 30 0.87 0.93 1.0 1.92 1.0 1.0 1.72 1.71 0.0 0.85 4958
717 717 16S 11 254 272   v4 G:C cWW       Strong B 1 8 0 0.0 0.03 0.0 0.03 0.99 1.0 1.98 1.94 0.0 0.83 4855
724 724 16S 11 255 271   v4 G:C cWW       Strong B 1 2 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.99 0.0 0.86 5019
731 731 16S 11 256 270   v4 U:A cWW       Strong B 72 12 6 0.14 0.07 0.0 0.07 0.92 0.93 1.54 1.9 0.0 0.85 5014
738 738 16S 11 257 269   v4 G:C cWW       Strong B 115 171 44 0.31 0.3 0.62 0.92 0.62 1.0 1.31 0.96 0.0 0.85 4967
745 745 16S 11 258 268   v4 G:U cWW       Strong B 165 171 111 0.66 0.8 0.91 1.71 0.91 0.97 0.93 0.91 0.0 0.85 5005
752 752 16S 11 259 267   v4 G:C cWW       Strong B 25 21 20 0.87 0.44 0.99 1.42 0.99 0.99 1.81 1.9 0.0 0.86 5029
759 759 16S 12 289 311   v4 G:C cWW       Strong B 42 44 29 0.67 0.82 0.98 1.81 0.98 0.99 1.52 1.49 0.0 0.85 5006

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");