Base-pair collective (covariation) scores

47 rows where group_code = "A", molecule = "16S" and strength = "Weak" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: helix_number, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc

conformation 4

strength 1

  • Weak · 47 ✖

molecule 1

  • 16S · 47 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
32 32 16S 1 13 21   v4 U:G No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.58 154
109 109 16S 3 35 549   v4 G:C cWW       Weak A 2 3 1 0.4 0.2 0.0 0.2 0.05 0.99 1.89 1.65 0.0 0.69 184
123 123 16S 3 37 547   v4 U:A tWS       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.69 183
130 130 16S 4 39 403   v4 G:C cWW       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.93 0.0 0.73 193
207 207 16S 5 54 357   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.85 0.0 0.76 201
214 214 16S 5 56 356   v4 U:A cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.8 0.02 0.74 201
228 228 16S 5 58 354   v4 C:G cWW       Weak A 4 3 2 0.57 0.91 0.98 1.88 0.98 0.98 1.24 1.11 0.02 0.74 200
242 242 16S 6 62 105   v4 U:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.77 202
270 270 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak A 4 8 3 0.5 0.36 0.87 1.23 0.86 0.88 1.45 0.91 0.0 0.74 199
781 781 16S 12 292 308   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87 229
879 879 16S 14 342 347   v4 C:G cWW       Weak A 1 0 0 0.0 0.83 0.99 1.83 0.99 1.0 1.46 1.85 0.04 0.81 224
914 914 16S 15 375 388   v4 U:G No BP       Weak A 0 3 0 0.0 0.0 0.0 0.0 0.02 1.0 1.81 1.85 0.02 0.84 228
949 949 16S 16 406 436   v4 G:C cWW       Weak A 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.86 1.91 0.0 0.82 218
977 977 16S 16 416 427   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 237
998 998 16S 16 419 424   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 237
1257 1257 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.83 220
1306 1306 16S 20 584 757   v4 G:U cWW       Weak A 1 1 0 0.0 0.0 0.0 0.0 0.02 1.0 1.96 1.72 0.0 0.83 219
1369 1369 16S 21 594 645   v4 U:G cWW       Weak A 11 10 3 0.29 0.12 0.0 0.12 0.45 0.96 0.86 1.09 0.0 0.88 231
1383 1383 16S 21 597 643   v4 G:C cWW       Weak A 3 0 0 0.0 0.0 0.0 0.0 0.96 0.96 1.77 1.95 0.0 0.88 233
1439 1439 16S 21 605 633   v4 U:G cWW       Weak A 10 8 2 0.22 0.64 0.81 1.46 0.44 0.99 0.51 0.6 0.01 0.86 230
1446 1446 16S 21 606 632   v4 G:U No BP       Weak A 3 14 0 0.0 0.08 0.0 0.08 0.07 0.59 0.86 1.0 0.01 0.87 232
1523 1523 16S 22 658 748   v4 C:G cWW       Weak A 3 7 2 0.4 0.38 0.59 0.97 0.33 0.33 0.66 0.66 0.0 0.83 219
1565 1565 16S 22 666 740   v4 G:U cWW       Weak A 2 6 1 0.25 0.35 0.67 1.02 0.51 1.0 1.23 0.48 0.0 0.84 222
1628 1628 16S 23 677 713   v4 U:G cWW       Weak A 2 4 0 0.0 0.0 0.0 0.0 0.88 0.9 1.85 1.51 0.0 0.88 232
1677 1677 16S 23 684 706   v4 U:A cWW       Weak A 3 3 0 0.0 0.24 0.89 1.13 0.86 0.86 1.43 1.72 0.0 0.87 230
1698 1698 16S 23 690 697   v4 G:U tSH       Weak A 2 0 0 0.0 0.0 0.0 0.0 0.34 1.0 1.07 2.0 0.0 0.88 233
1873 1873 16S 26 832 854   v4 G:U cWW       Weak A 2 2 1 0.5 0.06 0.0 0.06 0.06 0.99 1.75 1.72 0.0 0.87 230
1936 1936 16S 26.1 861 868   v4 G:C cWW       Weak A 0 5 0 0.0 0.0 0.0 0.0 0.83 1.0 1.91 1.36 0.0 0.87 231
2027 2027 16S 28 925 1391   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.67 177
2083 2083 16S 28 935 1380   v4 A:U cWW       Weak A 3 1 1 0.5 1.0 1.0 2.0 1.0 1.0 1.77 1.92 0.0 0.72 189
2118 2118 16S 29 942 1341   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.72 191
2174 2174 16S 30 950 1231   v4 U:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.01 1.0 1.91 2.0 0.0 0.7 184
2216 2216 16S 31 960 975   v4 U:A No BP       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.79 208
2223 2223 16S 31 961 974   v4 U:A No BP       Weak A 3 2 0 0.0 0.0 0.0 0.0 0.07 0.85 1.79 1.22 0.0 0.79 209
2454 2454 16S 34 1052 1206   v4 U:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.02 0.99 1.84 2.0 0.0 0.7 186
2461 2461 16S 34 1053 1205   v4 G:U No BP       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.92 0.0 0.75 197
2482 2482 16S 34 1058 1199   v4 G:U cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.74 195
2734 2734 16S 40 1158 1178   v4 C:G No BP       Weak A 1 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.95 2.0 0.0 0.74 195
2741 2741 16S 40 1159 1177   v4 U:G No BP       Weak A 7 1 0 0.0 0.01 0.0 0.01 0.53 0.99 1.0 1.92 0.0 0.75 198
2853 2853 16S 41 1255 1282   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.78 207
3021 3021 16S 44 1401 1501   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.39 104
3154 3154 16S 44 1425 1475   v4 U:G cWW       Weak A 11 7 4 0.44 0.36 0.65 1.01 0.53 1.0 0.3 -0.07 0.07 0.56 171
3196 3196 16S 44 1435 1466   v4 G:C cWW       Weak A 1 0 0 0.0 0.0 0.0 0.0 0.98 0.99 1.75 1.71 0.0 0.64 173
3238 3238 16S 44 1442 1460   v4 G:C cWW       Weak A 11 11 4 0.36 0.51 0.63 1.14 0.65 0.98 -0.17 0.11 0.01 0.61 169
3280 3280 16S 45 1506 1529   v4 U:G No BP       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.0 0.95 2.0 1.71 0.0 0.3 80
3315 3315 16S 45 1511 1524   v4 G:C cWW       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.97 1.0 2.0 1.83 0.0 0.3 80
3322 3322 16S 45 1512 1523   v4 U:G cWW       Weak A 0 1 0 0.0 0.0 0.0 0.0 0.05 1.0 2.0 1.75 0.0 0.31 82

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");