Base-pair collective (covariation) scores

11 rows where group_code = 3, molecule = "23S" and strength = "Significant" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, DfDel, PNuc, Seq

conformation 4

strength 1

  • Significant · 11 ✖

molecule 1

  • 23S · 11 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3586 3586 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant 3 2 2 0 0.0 0.0 0.0 0.0 0.02 0.02 1.9 1.86 0.0 0.64 405
3649 3649 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant 3 15 11 8 0.61 0.45 0.67 1.12 0.59 0.59 0.89 -0.72 0.19 0.47 411
3985 3985 23S 13 239 258   v4 C:G cWW       Significant 3 52 42 18 0.38 0.22 0.47 0.69 0.37 0.7 0.71 0.13 0.0 0.81 512
4104 4104 23S 18 287 353   v4 G:C cWW       Significant 3 52 50 19 0.37 0.4 0.5 0.9 0.5 0.62 -0.35 -0.31 0.02 0.71 523
4832 4832 23S 33 688 774   v4 U:G No BP       Significant 3 0 7 0 0.0 0.0 0.0 0.0 0.9 0.95 2.0 1.4 0.0 0.83 524
5329 5329 23S 38 874 903   v4 G:C cWW       Significant 3 9 16 6 0.48 0.09 0.0 0.09 0.37 0.59 1.42 0.2 0.0 0.77 493
5644 5644 23S 42 1035 1120   v4 U:G cWW       Significant 3 0 1 0 0.0 0.0 0.0 0.0 0.0 0.99 1.93 1.89 0.0 0.76 482
6239 6239 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant 3 8 22 2 0.13 0.78 0.9 1.68 0.63 0.65 -0.67 0.12 0.33 0.43 468
6932 6932 23S 61 1667 1993   v4 G:U tSH       Significant 3 1 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.98 0.0 0.68 430
8017 8017 23S 77 2124 2174   v4 G:C cWW       Significant 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.69 437
8542 8542 23S 88 2401 2415   v4 U:G cWW       Significant 3 21 10 8 0.52 0.1 0.0 0.1 0.35 0.94 0.7 1.49 0.0 0.69 437

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");