Base-pair collective (covariation) scores

47 rows where group_code = 3, molecule = "16S" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, Xch, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, DfDel, PNuc

conformation 4

strength 1

  • Weak · 47 ✖

molecule 1

  • 16S · 47 ✖

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
30 30 16S 1 13 21   v4 U:G No BP       Weak 3 4 7 1 0.18 0.05 0.0 0.05 0.0 1.0 1.93 1.91 0.0 0.43 3097
107 107 16S 3 35 549   v4 G:C cWW       Weak 3 14 10 4 0.33 0.03 0.0 0.03 0.94 0.99 1.89 1.68 0.0 0.63 4555
121 121 16S 3 37 547   v4 U:A tWS       Weak 3 4 9 0 0.0 0.02 0.0 0.02 0.99 1.0 1.93 1.92 0.0 0.65 4665
128 128 16S 4 39 403   v4 G:C cWW       Weak 3 24 35 6 0.2 0.24 0.81 1.05 0.81 0.82 1.57 1.12 0.0 0.69 4942
205 205 16S 5 54 357   v4 C:G cWW       Weak 3 6 2 1 0.25 0.41 1.0 1.4 1.0 1.0 1.94 1.94 0.0 0.74 5285
212 212 16S 5 56 356   v4 U:A cWW       Weak 3 2 2 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.98 0.0 0.73 5283
226 226 16S 5 58 354   v4 C:G cWW       Weak 3 9 6 2 0.27 0.54 0.99 1.54 0.99 0.99 1.9 1.89 0.0 0.75 5381
240 240 16S 6 62 105   v4 U:G cWW       Weak 3 9 18 1 0.07 0.01 0.0 0.01 0.02 0.99 1.9 1.87 0.0 0.78 5571
268 268 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak 3 27 32 7 0.24 0.04 0.0 0.04 0.21 0.21 1.18 1.55 0.0 0.78 5599
779 779 16S 12 292 308   v4 G:C cWW       Weak 3 19 12 2 0.13 0.43 0.9 1.33 0.9 0.99 1.55 1.33 0.0 0.86 6174
877 877 16S 14 342 347   v4 C:G cWW       Weak 3 10 0 0 0.0 0.19 0.0 0.19 1.0 1.0 1.83 1.97 0.01 0.84 6131
912 912 16S 15 375 388   v4 U:G No BP       Weak 3 3 21 1 0.08 0.01 0.0 0.01 0.0 0.99 1.96 1.88 0.0 0.81 5867
947 947 16S 16 406 436   v4 G:C cWW       Weak 3 5 9 1 0.14 0.05 0.0 0.05 0.99 1.0 1.0 0.96 0.0 0.71 6109
975 975 16S 16 416 427   v4 G:U cWW       Weak 3 26 58 3 0.07 0.05 0.0 0.05 0.17 0.97 0.66 0.32 0.0 0.69 6249
996 996 16S 16 419 424   v4 C:G cWW       Weak 3 86 23 10 0.18 0.06 0.0 0.06 0.82 1.0 0.19 0.79 0.02 0.67 6225
1255 1255 16S 19.1 571 865   v4 U:A cWW   3°: pseudoknot   Weak 3 2 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.98 0.0 0.81 5788
1304 1304 16S 20 584 757   v4 G:U cWW       Weak 3 2 8 0 0.0 0.0 0.0 0.0 0.0 0.99 1.97 1.93 0.0 0.83 5994
1367 1367 16S 21 594 645   v4 U:G cWW       Weak 3 121 84 24 0.23 0.07 0.0 0.07 0.38 0.96 0.04 0.42 0.0 0.69 6020
1381 1381 16S 21 597 643   v4 G:C cWW       Weak 3 4 7 0 0.0 0.02 0.0 0.02 0.99 0.99 0.96 0.96 0.0 0.7 6053
1437 1437 16S 21 605 633   v4 U:G cWW       Weak 3 12 46 5 0.17 0.13 0.0 0.13 0.04 0.92 0.82 0.41 0.01 0.69 6071
1444 1444 16S 21 606 632   v4 G:U No BP       Weak 3 67 128 12 0.12 0.1 0.0 0.1 0.07 0.78 0.34 0.02 0.01 0.69 6068
1521 1521 16S 22 658 748   v4 C:G cWW       Weak 3 197 200 53 0.27 0.37 0.56 0.93 0.49 0.57 0.15 0.31 0.0 0.83 5948
1563 1563 16S 22 666 740   v4 G:U cWW       Weak 3 26 32 3 0.1 0.05 0.0 0.05 0.06 0.84 1.73 1.15 0.0 0.84 6055
1626 1626 16S 23 677 713   v4 U:G cWW       Weak 3 34 76 14 0.26 0.13 0.0 0.13 0.35 0.94 1.48 1.0 0.0 0.85 6104
1675 1675 16S 23 684 706   v4 U:A cWW       Weak 3 21 15 5 0.28 0.54 0.9 1.44 0.86 0.98 1.14 1.05 0.0 0.85 6115
1696 1696 16S 23 690 697   v4 G:U tSH       Weak 3 22 5 0 0.0 0.0 0.0 0.0 0.08 1.0 1.58 1.97 0.0 0.85 6118
1871 1871 16S 26 832 854   v4 G:U cWW       Weak 3 49 75 15 0.24 0.48 0.85 1.33 0.11 0.82 1.14 0.8 0.0 0.84 6004
1934 1934 16S 26.1 861 868   v4 G:C cWW       Weak 3 65 45 7 0.13 0.17 0.0 0.17 0.87 0.94 1.35 1.46 0.02 0.78 5743
2025 2025 16S 28 925 1391   v4 G:U cWW       Weak 3 5 6 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.96 0.0 0.68 4863
2081 2081 16S 28 935 1380   v4 A:U cWW       Weak 3 7 4 1 0.18 0.09 0.0 0.09 1.0 1.0 1.93 1.97 0.0 0.71 5140
2116 2116 16S 29 942 1341   v4 G:U cWW       Weak 3 7 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.84 1.98 0.01 0.73 5323
2172 2172 16S 30 950 1231   v4 U:G cWW       Weak 3 8 12 1 0.1 0.01 0.0 0.01 0.15 1.0 1.92 1.38 0.0 0.74 5342
2214 2214 16S 31 960 975   v4 U:A No BP       Weak 3 1 14 0 0.0 0.0 0.0 0.0 0.72 1.0 1.97 1.14 0.0 0.77 5561
2221 2221 16S 31 961 974   v4 U:A No BP       Weak 3 4 37 0 0.0 0.01 0.0 0.01 0.69 0.89 1.94 0.72 0.0 0.77 5546
2452 2452 16S 34 1052 1206   v4 U:G cWW       Weak 3 5 7 0 0.0 0.0 0.0 0.0 0.0 1.0 1.95 1.94 0.0 0.75 5423
2459 2459 16S 34 1053 1205   v4 G:U No BP       Weak 3 2 13 0 0.0 0.01 0.0 0.01 0.03 1.0 1.95 1.77 0.0 0.78 5581
2480 2480 16S 34 1058 1199   v4 G:U cWW       Weak 3 1 2 0 0.0 0.03 0.0 0.03 0.0 1.0 1.93 1.97 0.0 0.78 5594
2732 2732 16S 40 1158 1178   v4 C:G No BP       Weak 3 7 9 1 0.12 0.06 0.0 0.06 0.97 0.97 1.91 1.77 0.0 0.81 5825
2739 2739 16S 40 1159 1177   v4 U:G No BP       Weak 3 65 16 5 0.12 0.14 0.0 0.14 0.07 0.94 1.29 1.71 0.0 0.81 5822
2851 2851 16S 41 1255 1282   v4 G:C cWW       Weak 3 2 9 0 0.0 0.07 0.0 0.07 0.99 1.0 0.97 0.92 0.0 0.68 5904
3019 3019 16S 44 1401 1501   v4 G:C cWW       Weak 3 7 2 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.96 0.0 0.39 2784
3152 3152 16S 44 1425 1475   v4 U:G cWW       Weak 3 98 66 15 0.18 0.24 0.49 0.73 0.17 0.57 0.33 0.54 0.0 0.61 4419
3194 3194 16S 44 1435 1466   v4 G:C cWW       Weak 3 45 63 15 0.28 0.35 0.85 1.2 0.84 0.96 1.26 1.04 0.0 0.63 4557
3236 3236 16S 44 1442 1460   v4 G:C cWW       Weak 3 104 76 14 0.16 0.08 0.0 0.08 0.29 0.31 0.15 0.4 0.0 0.61 4635
3278 3278 16S 45 1506 1529   v4 U:G No BP       Weak 3 6 8 0 0.0 0.03 0.0 0.03 0.01 0.99 1.88 1.8 0.0 0.2 1484
3313 3313 16S 45 1511 1524   v4 G:C cWW       Weak 3 7 23 1 0.07 0.11 0.0 0.11 0.93 0.98 1.55 1.35 0.01 0.23 1707
3320 3320 16S 45 1512 1523   v4 U:G cWW       Weak 3 6 14 2 0.2 0.03 0.0 0.03 0.01 0.97 1.89 1.69 0.0 0.24 1743

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");