Base-pair collective (covariation) scores

5 rows where group_code = 3, molecule = "16S" and strength = "No Support" sorted by position_1

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Suggested facets: reference_base_pair, Xch, Ych, PE, PES, WC, XCons, YCons

conformation 2

strength 1

  • No Support · 5 ✖

molecule 1

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
1213 1213 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support 3 3 4 0 0.0 0.05 0.0 0.05 1.0 1.0 1.97 1.96 0.0 0.78 5577
2018 2018 16S 28 924 1392   v4 C:G cWW       No Support 3 5 3 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.69 4928
2130 2130 16S 30 944 1237   v4 G:C No BP       No Support 3 2 1 0 0.0 0.11 0.0 0.11 1.0 1.0 1.96 1.99 0.0 0.74 5326
2235 2235 16S 31 963 972   v4 G:C cWW       No Support 3 5 3 0 0.0 0.14 0.0 0.14 1.0 1.0 1.96 1.97 0.0 0.77 5549
2501 2501 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support 3 2 16 1 0.11 0.1 0.0 0.1 0.97 1.0 1.95 1.79 0.0 0.76 5466

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");