Base-pair collective (covariation) scores

35 rows where conformation = "tWW", molecule = "23S" and strength = "Strong" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

group_code 7

strength 1

  • Strong · 35 ✖

molecule 1

  • 23S · 35 ✖

conformation 1

  • tWW · 35 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3949 3949 23S 12.1 234 430   v4 U:A tWW       Strong T 10 12 6 0.55 0.63 0.97 1.6 0.97 0.98 0.39 0.44 0.01 0.62 866
3950 3950 23S 12.1 234 430   v4 U:A tWW       Strong 3 7 7 5 0.71 0.69 0.98 1.66 0.98 0.99 1.59 1.68 0.01 0.81 512
3951 3951 23S 12.1 234 430   v4 U:A tWW       Strong B 5 6 5 0.91 1.0 1.0 2.0 1.0 1.0 1.54 1.58 0.0 0.84 276
3952 3952 23S 12.1 234 430   v4 U:A tWW       Strong A 1 0 0 0.0 0.33 0.94 1.28 0.94 0.94 1.51 1.7 0.0 0.88 36
3953 3953 23S 12.1 234 430   v4 U:A tWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
3954 3954 23S 12.1 234 430   v4 U:A tWW       Strong E 1 1 0 0.0 0.0 0.0 0.0 0.95 0.98 1.79 1.82 0.01 0.75 200
3955 3955 23S 12.1 234 430   v4 U:A tWW       Strong M 3 5 1 0.25 0.53 0.79 1.32 0.79 0.81 -0.63 -0.53 0.04 0.14 254
5783 5783 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong T 22 13 8 0.46 0.94 0.97 1.91 0.97 0.98 0.4 -0.04 0.12 0.62 870
5784 5784 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong 3 6 4 4 0.8 0.99 1.0 1.99 1.0 1.0 0.94 0.98 0.0 0.78 495
5785 5785 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong B 2 1 1 0.67 0.67 1.0 1.66 1.0 1.0 1.89 1.93 0.0 0.76 247
5786 5786 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong A 3 3 3 1.0 1.0 1.0 2.0 1.0 1.0 1.03 1.03 0.0 0.9 37
5787 5787 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong C 0 1 0 0.0 0.0 0.0 0.0 0.98 0.98 2.0 1.86 0.0 0.97 100
5788 5788 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong E 1 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.86 1.95 0.0 0.8 211
5789 5789 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong M 16 8 4 0.33 0.5 0.8 1.3 0.8 0.82 0.16 -0.62 0.6 0.19 275
7169 7169 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong T 13 19 12 0.75 0.94 0.98 1.92 0.02 0.02 1.02 0.86 0.0 0.73 770
7170 7170 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong 3 7 7 7 1.0 1.0 1.0 2.0 0.0 0.0 1.01 1.05 0.0 0.65 412
7171 7171 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong B 4 4 4 1.0 1.0 1.0 2.0 0.0 0.0 1.08 1.04 0.0 0.72 236
7172 7172 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong A 3 3 3 1.0 1.0 1.0 2.0 0.0 0.0 1.34 1.34 0.0 1.0 41
7173 7173 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong C 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.92 95
7174 7174 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.93 2.0 0.0 0.51 135
7175 7175 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong M 6 11 5 0.59 0.62 0.93 1.55 0.07 0.07 1.31 1.02 0.01 0.83 263
7232 7232 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong T 6 23 4 0.28 0.64 0.89 1.54 0.89 0.9 0.7 0.38 0.0 0.74 842
7233 7233 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong 3 1 5 2 0.67 0.95 0.98 1.94 0.98 0.99 0.9 0.85 0.0 0.72 458
7234 7234 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 2.0 0.0 0.8 262
7235 7235 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7236 7236 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong C 0 7 0 0.0 0.0 0.0 0.0 0.4 0.4 2.0 1.03 0.0 0.98 101
7237 7237 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong E 1 5 2 0.67 0.61 0.95 1.56 0.95 0.97 1.5 1.24 0.01 0.58 155
7238 7238 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong M 5 11 2 0.25 0.39 0.94 1.33 0.94 0.94 0.56 0.44 0.0 0.71 283
7505 7505 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong T 7 7 3 0.43 0.07 0.0 0.07 0.76 1.0 1.14 1.83 0.0 0.81 848
7506 7506 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong 3 0 2 0 0.0 0.0 0.0 0.0 0.55 1.0 0.98 1.95 0.0 0.69 436
7507 7507 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong B 0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.91 0.0 0.74 241
7508 7508 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0 41
7509 7509 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7510 7510 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.93 1.94 0.0 0.59 155
7511 7511 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong M 6 5 3 0.55 0.74 0.98 1.72 0.98 0.99 1.62 1.66 0.0 1.0 311

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");