Base-pair collective (covariation) scores

6 rows where conformation = "tWW", group_code = "T" and strength = "Strong" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Cov1, Cov3, WC, WCGU, DfDel, PNuc

molecule 2

strength 1

  • Strong · 6 ✖

group_code 1

conformation 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3949 3949 23S 12.1 234 430   v4 U:A tWW       Strong T 10 12 6 0.55 0.63 0.97 1.6 0.97 0.98 0.39 0.44 0.01 0.62 866
1702 1702 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong T 166 127 52 0.35 0.68 0.85 1.53 0.06 0.07 0.69 0.8 0.0 0.84 7189
5783 5783 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong T 22 13 8 0.46 0.94 0.97 1.91 0.97 0.98 0.4 -0.04 0.12 0.62 870
7169 7169 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong T 13 19 12 0.75 0.94 0.98 1.92 0.02 0.02 1.02 0.86 0.0 0.73 770
7232 7232 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong T 6 23 4 0.28 0.64 0.89 1.54 0.89 0.9 0.7 0.38 0.0 0.74 842
7505 7505 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong T 7 7 3 0.43 0.07 0.0 0.07 0.76 1.0 1.14 1.83 0.0 0.81 848

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");