Base-pair collective (covariation) scores

6 rows where conformation = "tWW", group_code = "M" and strength = "Strong" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PES, XCons, DfDel

molecule 2

strength 1

  • Strong · 6 ✖

group_code 1

conformation 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3955 3955 23S 12.1 234 430   v4 U:A tWW       Strong M 3 5 1 0.25 0.53 0.79 1.32 0.79 0.81 -0.63 -0.53 0.04 0.14 254
1708 1708 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong M 101 59 8 0.1 0.18 0.0 0.18 0.29 0.35 0.16 0.15 0.02 0.74 896
5789 5789 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong M 16 8 4 0.33 0.5 0.8 1.3 0.8 0.82 0.16 -0.62 0.6 0.19 275
7175 7175 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong M 6 11 5 0.59 0.62 0.93 1.55 0.07 0.07 1.31 1.02 0.01 0.83 263
7238 7238 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong M 5 11 2 0.25 0.39 0.94 1.33 0.94 0.94 0.56 0.44 0.0 0.71 283
7511 7511 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong M 6 5 3 0.55 0.74 0.98 1.72 0.98 0.99 1.62 1.66 0.0 1.0 311

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");