Base-pair collective (covariation) scores

42 rows where conformation = "tSH" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc

group_code 7

strength 3

molecule 2

conformation 1

  • tSH · 42 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3718 3718 23S 7 82 104   v4 U:A tSH       Strong T 24 27 9 0.35 0.51 0.82 1.33 0.09 0.75 -0.57 -0.66 0.08 0.4 745
3719 3719 23S 7 82 104   v4 U:A tSH       Strong 3 16 21 5 0.27 0.51 0.79 1.29 0.07 0.67 -0.04 -0.57 0.12 0.47 413
3720 3720 23S 7 82 104   v4 U:A tSH       Strong B 7 16 3 0.26 0.65 0.86 1.51 0.09 0.72 0.66 0.52 0.0 0.79 258
3721 3721 23S 7 82 104   v4 U:A tSH       Strong A 4 5 2 0.44 0.25 0.67 0.92 0.0 0.25 1.1 0.73 0.0 0.88 36
3722 3722 23S 7 82 104   v4 U:A tSH       Strong C 4 4 3 0.75 0.5 0.96 1.46 0.04 0.96 1.57 1.58 0.0 0.95 98
3723 3723 23S 7 82 104   v4 U:A tSH       Strong E 5 0 0 0.0 0.0 0.0 0.0 0.0 1.0 -0.09 -0.05 0.0 0.0 119
3724 3724 23S 7 82 104   v4 U:A tSH       Strong M 4 2 1 0.33 0.56 0.7 1.26 0.48 0.85 -0.56 -0.45 0.01 0.09 234
3928 3928 23S 11 195 200   v4 A:U tSH       Strong T 4 5 3 0.67 0.59 0.99 1.58 0.99 0.99 1.69 1.66 0.0 0.79 840
3929 3929 23S 11 195 200   v4 A:U tSH       Strong 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 1.98 0.0 0.77 486
3930 3930 23S 11 195 200   v4 A:U tSH       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.83 271
3931 3931 23S 11 195 200   v4 A:U tSH       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
3932 3932 23S 11 195 200   v4 A:U tSH       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
3933 3933 23S 11 195 200   v4 A:U tSH       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.84 1.94 0.0 0.68 179
3934 3934 23S 11 195 200   v4 A:U tSH       Strong M 4 5 3 0.67 0.62 0.97 1.6 0.97 0.97 1.28 1.15 0.0 0.76 254
1695 1695 16S 23 690 697   v4 G:U tSH       Weak T 103 33 7 0.1 0.28 0.87 1.15 0.12 0.94 1.05 1.41 0.0 0.84 7180
1696 1696 16S 23 690 697   v4 G:U tSH       Weak 3 22 5 0 0.0 0.0 0.0 0.0 0.08 1.0 1.58 1.97 0.0 0.85 6118
1697 1697 16S 23 690 697   v4 G:U tSH       Weak B 18 2 0 0.0 0.0 0.0 0.0 0.08 1.0 1.56 1.99 0.0 0.83 4853
1698 1698 16S 23 690 697   v4 G:U tSH       Weak A 2 0 0 0.0 0.0 0.0 0.0 0.34 1.0 1.07 2.0 0.0 0.88 233
1699 1699 16S 23 690 697   v4 G:U tSH       Weak C 3 1 0 0.0 0.06 0.0 0.06 0.1 0.99 1.45 1.95 0.01 0.92 169
1700 1700 16S 23 690 697   v4 G:U tSH       Weak E 2 3 0 0.0 0.0 0.0 0.0 0.01 0.99 1.96 1.89 0.0 0.98 1032
1701 1701 16S 23 690 697   v4 G:U tSH       Weak M 78 27 7 0.13 0.3 0.54 0.84 0.4 0.54 0.43 0.43 0.0 0.77 901
6931 6931 23S 61 1667 1993   v4 G:U tSH       Significant T 4 6 2 0.4 0.5 0.99 1.49 0.02 0.99 1.81 1.87 0.0 0.77 807
6932 6932 23S 61 1667 1993   v4 G:U tSH       Significant 3 1 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.98 0.0 0.68 430
6933 6933 23S 61 1667 1993   v4 G:U tSH       Significant B 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.96 0.0 0.72 236
6934 6934 23S 61 1667 1993   v4 G:U tSH       Significant A 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0 41
6935 6935 23S 61 1667 1993   v4 G:U tSH       Significant C 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.98 101
6936 6936 23S 61 1667 1993   v4 G:U tSH       Significant E 1 0 0 0.0 0.0 0.0 0.0 0.01 1.0 1.95 2.0 0.0 0.58 153
6937 6937 23S 61 1667 1993   v4 G:U tSH       Significant M 3 5 2 0.5 0.59 0.97 1.56 0.05 0.99 1.57 1.73 0.01 0.88 276
8100 8100 23S 78 2144 2147   v4 G:A tSH       Strong T 27 21 14 0.58 0.76 0.89 1.65 0.07 0.43 -0.57 -0.49 0.0 0.51 848
8101 8101 23S 78 2144 2147   v4 G:A tSH       Strong 3 18 16 10 0.59 0.72 0.91 1.63 0.08 0.31 0.32 0.4 0.01 0.63 438
8102 8102 23S 78 2144 2147   v4 G:A tSH       Strong B 3 3 2 0.67 0.73 0.98 1.72 0.02 0.06 1.64 1.7 0.0 0.74 242
8103 8103 23S 78 2144 2147   v4 G:A tSH       Strong A 2 2 2 1.0 1.0 1.0 2.0 0.0 0.73 1.16 1.16 0.0 1.0 41
8104 8104 23S 78 2144 2147   v4 G:A tSH       Strong C 2 1 1 0.67 0.0 0.0 0.0 0.01 0.94 1.78 1.72 0.0 0.98 101
8105 8105 23S 78 2144 2147   v4 G:A tSH       Strong E 13 11 6 0.5 0.47 0.7 1.17 0.24 0.7 -0.51 -0.26 0.01 0.43 155
8106 8106 23S 78 2144 2147   v4 G:A tSH       Strong M 7 4 3 0.55 0.32 0.56 0.88 0.18 0.21 -0.53 -0.42 0.01 0.11 309
9199 9199 23S 97 2746 2758   v4 U:A tSH       Strong T 8 11 6 0.63 0.37 0.97 1.35 0.97 0.98 1.67 1.57 0.0 0.66 697
9200 9200 23S 97 2746 2758   v4 U:A tSH       Strong 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.63 399
9201 9201 23S 97 2746 2758   v4 U:A tSH       Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.95 0.0 0.7 227
9202 9202 23S 97 2746 2758   v4 U:A tSH       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
9203 9203 23S 97 2746 2758   v4 U:A tSH       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.78 2.0 0.0 0.56 58
9204 9204 23S 97 2746 2758   v4 U:A tSH       Strong E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.5 131
9205 9205 23S 97 2746 2758   v4 U:A tSH       Strong M 7 11 6 0.67 0.38 0.93 1.31 0.93 0.96 1.29 1.02 0.0 0.73 240

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");