Base-pair collective (covariation) scores

35 rows where conformation = "tHS" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

group_code 7

strength 3

molecule 1

conformation 1

  • tHS · 35 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3585 3585 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant T 12 11 6 0.52 0.28 0.94 1.22 0.06 0.06 0.42 0.29 0.01 0.49 719
3586 3586 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant 3 2 2 0 0.0 0.0 0.0 0.0 0.02 0.02 1.9 1.86 0.0 0.64 405
3587 3587 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant B 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.77 252
3588 3588 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant A 1 1 0 0.0 0.0 0.0 0.0 0.17 0.17 1.69 1.5 0.0 0.88 36
3589 3589 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant C 0 2 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.71 0.0 0.79 81
3590 3590 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant E 1 1 0 0.0 0.0 0.0 0.0 0.02 0.02 1.84 1.79 0.0 0.44 117
3591 3591 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant M 10 7 6 0.71 0.5 0.68 1.18 0.68 0.68 -0.51 -0.56 0.02 0.1 233
6749 6749 23S 59 1528 1543   v4 A:G tHS   3°: base pair   Strong T 18 21 12 0.61 0.31 0.58 0.89 0.52 0.55 -0.74 -0.81 0.0 0.45 859
6750 6750 23S 59 1528 1543   v4 A:G tHS   3°: base pair   Strong 3 13 17 12 0.8 0.34 0.61 0.95 0.56 0.58 -0.04 -0.14 0.01 0.68 483
6751 6751 23S 59 1528 1543   v4 A:G tHS   3°: base pair   Strong B 5 5 3 0.6 0.78 0.94 1.72 0.2 0.23 0.4 0.35 0.0 0.71 264
6752 6752 23S 59 1528 1543   v4 A:G tHS   3°: base pair   Strong A 2 3 3 1.0 0.8 0.97 1.77 0.97 1.0 0.17 0.03 0.0 0.71 39
6753 6753 23S 59 1528 1543   v4 A:G tHS   3°: base pair   Strong C 5 4 0 0.0 0.35 0.55 0.9 0.23 0.32 -0.68 -0.83 0.1 0.43 100
6754 6754 23S 59 1528 1543   v4 A:G tHS   3°: base pair   Strong E 6 9 6 0.8 0.94 0.98 1.92 0.98 0.99 0.05 0.14 0.01 0.63 180
6755 6755 23S 59 1528 1543   v4 A:G tHS   3°: base pair   Strong M 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.03 -0.06 0.0 0.0 276
6973 6973 23S 62 1690 1697   v4 A:G tHS   3°: base pair   Strong T 15 36 10 0.39 0.36 0.83 1.2 0.01 0.01 0.15 -0.16 0.0 0.58 836
6974 6974 23S 62 1690 1697   v4 A:G tHS   3°: base pair   Strong 3 11 19 7 0.47 0.52 0.91 1.43 0.0 0.01 1.33 1.06 0.0 0.72 458
6975 6975 23S 62 1690 1697   v4 A:G tHS   3°: base pair   Strong B 5 11 2 0.25 0.55 0.89 1.44 0.0 0.0 1.33 0.9 0.0 0.8 262
6976 6976 23S 62 1690 1697   v4 A:G tHS   3°: base pair   Strong A 4 4 4 1.0 0.67 0.88 1.54 0.0 0.05 0.55 0.69 0.0 1.0 41
6977 6977 23S 62 1690 1697   v4 A:G tHS   3°: base pair   Strong C 1 10 1 0.18 0.02 0.0 0.02 0.01 0.01 1.82 0.84 0.0 0.97 101
6978 6978 23S 62 1690 1697   v4 A:G tHS   3°: base pair   Strong E 2 4 1 0.33 0.2 0.0 0.2 0.0 0.01 1.84 1.61 0.0 0.59 155
6979 6979 23S 62 1690 1697   v4 A:G tHS   3°: base pair   Strong M 3 7 2 0.4 0.5 0.81 1.31 0.04 0.04 -0.44 -0.51 0.0 0.15 277
7148 7148 23S 65 1775 1789   v4 U:A tHS       Weak T 3 7 1 0.2 0.48 0.99 1.46 0.99 0.99 1.88 1.79 0.0 0.81 842
7149 7149 23S 65 1775 1789   v4 U:A tHS       Weak 3 1 2 0 0.0 0.0 0.0 0.0 0.99 0.99 1.98 1.93 0.0 0.73 458
7150 7150 23S 65 1775 1789   v4 U:A tHS       Weak B 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 2.0 0.0 0.8 261
7151 7151 23S 65 1775 1789   v4 U:A tHS       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0 41
7152 7152 23S 65 1775 1789   v4 U:A tHS       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98 101
7153 7153 23S 65 1775 1789   v4 U:A tHS       Weak E 0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.83 0.0 0.59 156
7154 7154 23S 65 1775 1789   v4 U:A tHS       Weak M 2 5 1 0.29 0.61 0.97 1.59 0.97 0.97 1.73 1.59 0.0 0.91 283
7239 7239 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak T 9 27 4 0.22 0.61 0.81 1.43 0.04 0.33 -0.16 -0.58 0.02 0.58 840
7240 7240 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak 3 6 9 1 0.13 0.88 0.95 1.83 0.03 0.4 0.82 0.69 0.0 0.71 456
7241 7241 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak B 0 3 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.85 0.0 0.79 259
7242 7242 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak A 2 1 0 0.0 0.7 0.93 1.63 0.0 0.76 0.92 1.29 0.0 1.0 41
7243 7243 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak C 0 10 0 0.0 0.0 0.0 0.0 0.04 0.04 2.0 0.36 0.01 0.97 101
7244 7244 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak E 4 5 1 0.22 0.42 0.95 1.37 0.07 0.99 1.37 1.3 0.0 0.57 156
7245 7245 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak M 3 8 3 0.55 0.22 0.66 0.88 0.17 0.19 -0.46 -0.57 0.06 0.17 283

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");