Base-pair collective (covariation) scores

371 rows where conformation = "cWW", molecule = "23S" and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, PE, DfDel

group_code 7

  • 3 53
  • A 53
  • B 53
  • C 53
  • E 53
  • M 53
  • T 53

strength 1

  • Weak · 371 ✖

molecule 1

  • 23S · 371 ✖

conformation 1

  • cWW · 371 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3396 3396 23S 1 8 2895   v4 C:G cWW       Weak T 31 29 7 0.23 0.57 0.73 1.3 0.73 0.92 -0.23 -0.26 0.0 0.27 329
3397 3397 23S 1 8 2895   v4 C:G cWW       Weak 3 22 21 5 0.23 0.62 0.75 1.37 0.75 0.99 -0.14 -0.16 0.01 0.33 251
3398 3398 23S 1 8 2895   v4 C:G cWW       Weak B 11 13 3 0.25 0.57 0.72 1.29 0.72 0.99 0.77 0.73 0.0 0.54 177
3399 3399 23S 1 8 2895   v4 C:G cWW       Weak A 5 8 2 0.31 0.9 0.93 1.82 0.93 0.96 0.1 -0.3 0.07 0.68 33
3400 3400 23S 1 8 2895   v4 C:G cWW       Weak C 4 4 1 0.25 0.26 0.68 0.94 0.68 0.7 0.57 1.32 0.0 0.43 44
3401 3401 23S 1 8 2895   v4 C:G cWW       Weak E 6 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.91 -0.43 0.01 0.0 41
3402 3402 23S 1 8 2895   v4 C:G cWW       Weak M 5 4 1 0.22 0.47 0.67 1.14 0.67 0.74 -0.74 -0.53 0.02 0.09 34
3662 3662 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak T 15 8 3 0.26 0.38 0.94 1.32 0.94 0.95 -0.29 -0.15 0.12 0.39 740
3663 3663 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak 3 10 2 1 0.17 0.35 0.96 1.32 0.96 0.98 0.75 0.43 0.19 0.47 411
3664 3664 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak B 2 1 0 0.0 0.29 0.96 1.25 0.96 0.98 1.63 1.86 0.0 0.79 257
3665 3665 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.69 0.0 0.88 36
3666 3666 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak C 2 2 1 0.5 0.5 0.97 1.47 0.97 0.97 1.66 1.51 0.01 0.92 96
3667 3667 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak E 7 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.25 -0.05 0.45 0.0 118
3668 3668 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak M 3 4 1 0.29 0.39 0.58 0.96 0.37 0.42 -0.48 -0.47 0.02 0.06 233
3872 3872 23S 10 158 168   v4 U:G cWW       Weak T 18 23 8 0.39 0.1 0.0 0.1 0.27 0.9 -0.27 -0.52 0.01 0.43 759
3873 3873 23S 10 158 168   v4 U:G cWW       Weak 3 11 10 5 0.48 0.06 0.0 0.06 0.29 0.97 0.62 0.08 0.0 0.56 426
3874 3874 23S 10 158 168   v4 U:G cWW       Weak B 5 3 1 0.25 0.11 0.0 0.11 0.03 0.99 1.15 1.28 0.0 0.75 270
3875 3875 23S 10 158 168   v4 U:G cWW       Weak A 1 1 1 1.0 0.5 0.75 1.25 0.0 0.25 -0.59 -0.37 0.07 0.1 36
3876 3876 23S 10 158 168   v4 U:G cWW       Weak C 6 13 3 0.32 0.17 0.0 0.17 0.18 0.65 0.17 0.32 0.07 0.85 99
3877 3877 23S 10 158 168   v4 U:G cWW       Weak E 5 6 3 0.55 0.56 0.93 1.5 0.93 0.94 0.53 0.68 0.0 0.4 120
3878 3878 23S 10 158 168   v4 U:G cWW       Weak M 1 0 0 0.0 0.5 0.83 1.33 0.33 0.33 -0.15 -0.17 0.0 0.02 234
4054 4054 23S 16 274 363   v4 C:G cWW       Weak T 32 17 4 0.16 0.32 0.46 0.78 0.46 0.56 -0.97 -0.85 0.16 0.2 872
4055 4055 23S 16 274 363   v4 C:G cWW       Weak 3 27 14 4 0.2 0.32 0.46 0.78 0.45 0.56 -0.9 -0.96 0.22 0.3 518
4056 4056 23S 16 274 363   v4 C:G cWW       Weak B 8 2 1 0.2 0.88 0.92 1.79 0.92 0.98 -0.36 -0.38 0.01 0.73 276
4057 4057 23S 16 274 363   v4 C:G cWW       Weak A 4 4 1 0.25 0.58 0.72 1.31 0.72 0.75 0.44 0.59 0.0 0.88 36
4058 4058 23S 16 274 363   v4 C:G cWW       Weak C 5 2 0 0.0 0.43 0.56 0.98 0.44 0.44 -0.85 -0.64 0.32 0.09 100
4059 4059 23S 16 274 363   v4 C:G cWW       Weak E 15 8 2 0.17 0.31 0.51 0.82 0.37 0.39 -0.64 -0.88 0.13 0.41 204
4060 4060 23S 16 274 363   v4 C:G cWW       Weak M 0 1 0 0.0 0.5 0.75 1.25 0.5 0.75 -0.23 -0.3 0.01 0.03 254
4061 4061 23S 18 281 359   v4 C:G cWW       Weak T 41 56 13 0.27 0.32 0.43 0.75 0.46 0.61 -0.97 -0.87 0.09 0.4 869
4062 4062 23S 18 281 359   v4 C:G cWW       Weak 3 26 44 9 0.26 0.34 0.46 0.81 0.44 0.61 -0.79 -0.35 0.14 0.56 516
4063 4063 23S 18 281 359   v4 C:G cWW       Weak B 15 22 5 0.27 0.33 0.49 0.82 0.38 0.58 0.08 0.03 0.01 0.83 276
4064 4064 23S 18 281 359   v4 C:G cWW       Weak A 5 5 3 0.6 0.79 0.86 1.65 0.86 0.92 0.15 0.06 0.0 0.88 36
4065 4065 23S 18 281 359   v4 C:G cWW       Weak C 14 9 3 0.26 0.32 0.55 0.87 0.55 0.61 -0.8 -0.62 0.05 0.49 99
4066 4066 23S 18 281 359   v4 C:G cWW       Weak E 6 17 1 0.09 0.34 0.57 0.91 0.51 0.55 -0.73 -0.56 0.35 0.2 204
4067 4067 23S 18 281 359   v4 C:G cWW       Weak M 1 3 1 0.5 0.55 0.67 1.21 0.67 0.73 -0.35 -0.35 0.0 0.05 254
4082 4082 23S 18 284 356   v4 U:G cWW       Weak T 73 65 23 0.33 0.35 0.51 0.86 0.51 0.63 -0.91 -0.88 0.0 0.51 870
4083 4083 23S 18 284 356   v4 U:G cWW       Weak 3 49 44 17 0.37 0.37 0.55 0.92 0.55 0.66 -0.39 -0.3 0.01 0.7 517
4084 4084 23S 18 284 356   v4 U:G cWW       Weak B 29 23 11 0.42 0.44 0.63 1.07 0.63 0.7 0.04 -0.07 0.02 0.82 277
4085 4085 23S 18 284 356   v4 U:G cWW       Weak A 3 2 0 0.0 0.3 0.81 1.11 0.81 0.94 0.95 1.18 0.0 0.88 36
4086 4086 23S 18 284 356   v4 U:G cWW       Weak C 22 16 4 0.21 0.22 0.34 0.56 0.33 0.49 -0.48 -0.68 0.01 0.74 99
4087 4087 23S 18 284 356   v4 U:G cWW       Weak E 17 19 6 0.33 0.29 0.42 0.7 0.34 0.53 -0.71 -0.44 0.06 0.54 204
4088 4088 23S 18 284 356   v4 U:G cWW       Weak M 2 5 2 0.57 0.33 0.5 0.83 0.38 0.44 -0.34 -0.38 0.0 0.05 254
4145 4145 23S 18 293 347   v4 U:A cWW       Weak T 52 48 20 0.4 0.34 0.69 1.03 0.69 0.75 -0.58 -0.56 0.01 0.56 888
4146 4146 23S 18 293 347   v4 U:A cWW       Weak 3 31 34 14 0.43 0.36 0.72 1.08 0.72 0.77 0.12 0.24 0.04 0.76 534
4147 4147 23S 18 293 347   v4 U:A cWW       Weak B 11 9 2 0.2 0.12 0.0 0.12 0.86 0.91 1.2 1.53 0.01 0.84 278
4148 4148 23S 18 293 347   v4 U:A cWW       Weak A 1 2 1 0.67 0.21 0.57 0.78 0.49 0.69 0.37 0.92 0.02 0.85 36
4149 4149 23S 18 293 347   v4 U:A cWW       Weak C 17 10 5 0.37 0.23 0.61 0.84 0.61 0.61 0.12 0.16 0.14 0.78 100
4150 4150 23S 18 293 347   v4 U:A cWW       Weak E 19 23 11 0.52 0.34 0.55 0.88 0.53 0.56 -0.54 -0.18 0.06 0.65 220
4151 4151 23S 18 293 347   v4 U:A cWW       Weak M 4 4 1 0.25 0.2 0.0 0.2 0.48 0.7 -0.43 -0.4 0.0 0.07 254
4243 4243 23S 20 327 335   v4 G:C cWW       Weak T 3 1 1 0.5 0.82 0.99 1.81 0.99 0.99 0.49 0.52 0.0 0.63 891
4244 4244 23S 20 327 335   v4 G:C cWW       Weak 3 2 1 1 0.67 0.89 1.0 1.89 1.0 1.0 1.72 1.75 0.0 0.85 537
4245 4245 23S 20 327 335   v4 G:C cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.96 0.0 0.86 281
4246 4246 23S 20 327 335   v4 G:C cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
4247 4247 23S 20 327 335   v4 G:C cWW       Weak C 0 0 0 0.0 1.0 1.0 2.0 1.0 1.0 1.74 1.67 0.01 0.94 100
4248 4248 23S 20 327 335   v4 G:C cWW       Weak E 2 1 1 0.67 0.89 0.99 1.88 0.99 0.99 1.48 1.53 0.0 0.83 220
4249 4249 23S 20 327 335   v4 G:C cWW       Weak M 1 0 0 0.0 0.33 0.94 1.27 0.94 0.94 -0.36 -0.32 0.0 0.1 254
4271 4271 23S 21 378 396   v4 C:G cWW       Weak T 25 15 11 0.55 0.1 0.0 0.1 0.55 0.99 -0.24 0.36 0.0 0.65 893
4272 4272 23S 21 378 396   v4 C:G cWW       Weak 3 14 8 4 0.36 0.09 0.0 0.09 0.63 1.0 0.83 1.64 0.0 0.85 538
4273 4273 23S 21 378 396   v4 C:G cWW       Weak B 3 1 1 0.5 0.82 0.99 1.81 0.99 1.0 1.74 1.79 0.0 0.86 280
4274 4274 23S 21 378 396   v4 C:G cWW       Weak A 4 2 2 0.67 0.37 0.68 1.04 0.32 1.0 0.49 1.01 0.0 0.9 37
4275 4275 23S 21 378 396   v4 C:G cWW       Weak C 3 1 1 0.5 0.33 0.94 1.27 0.07 0.98 1.47 1.81 0.0 0.97 100
4276 4276 23S 21 378 396   v4 C:G cWW       Weak E 7 5 1 0.17 0.04 0.0 0.04 0.23 0.99 1.22 1.71 0.0 0.84 221
4277 4277 23S 21 378 396   v4 C:G cWW       Weak M 8 6 6 0.86 0.4 0.6 1.0 0.6 0.87 -0.54 -0.51 0.0 0.12 255
4299 4299 23S 21 382 392   v4 A:U cWW       Weak T 28 18 7 0.3 0.17 0.0 0.17 0.37 0.52 -0.54 0.05 0.0 0.64 894
4300 4300 23S 21 382 392   v4 A:U cWW       Weak 3 14 14 5 0.36 0.24 0.59 0.82 0.35 0.43 0.48 1.21 0.0 0.85 539
4301 4301 23S 21 382 392   v4 A:U cWW       Weak B 12 11 4 0.35 0.2 0.65 0.85 0.65 0.79 1.19 1.07 0.0 0.86 281
4302 4302 23S 21 382 392   v4 A:U cWW       Weak A 1 1 1 1.0 1.0 1.0 2.0 0.22 0.22 1.25 1.25 0.0 0.9 37
4303 4303 23S 21 382 392   v4 A:U cWW       Weak C 10 0 0 0.0 0.05 0.0 0.05 0.4 0.98 0.93 1.76 0.0 0.96 100
4304 4304 23S 21 382 392   v4 A:U cWW       Weak E 1 2 0 0.0 0.0 0.0 0.0 0.0 0.01 1.93 1.87 0.0 0.84 221
4305 4305 23S 21 382 392   v4 A:U cWW       Weak M 4 4 2 0.5 0.32 0.48 0.8 0.48 0.69 -0.47 -0.44 0.0 0.09 255
4460 4460 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak T 16 29 6 0.27 0.43 0.77 1.2 0.22 0.35 -0.24 -0.4 0.0 0.62 881
4461 4461 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak 3 14 17 3 0.19 0.51 0.78 1.29 0.26 0.42 0.42 0.46 0.01 0.8 525
4462 4462 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak B 1 3 0 0.0 0.33 0.99 1.32 0.0 0.01 1.87 1.85 0.0 0.86 281
4463 4463 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak A 2 3 1 0.4 0.18 0.0 0.18 0.76 1.0 1.7 1.12 0.0 0.9 37
4464 4464 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.01 2.0 1.63 0.0 0.97 100
4465 4465 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak E 11 11 2 0.18 0.43 0.67 1.1 0.55 0.93 0.13 0.14 0.02 0.71 207
4466 4466 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak M 2 10 3 0.5 0.06 0.0 0.06 0.29 0.33 -0.47 -0.61 0.01 0.15 256
4516 4516 23S 25.1 564 577   v4 C:G cWW       Weak T 3 4 1 0.29 0.4 0.99 1.39 0.99 0.99 1.81 1.78 0.0 0.84 888
4517 4517 23S 25.1 564 577   v4 C:G cWW       Weak 3 0 2 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.96 0.0 0.83 526
4518 4518 23S 25.1 564 577   v4 C:G cWW       Weak B 0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.93 0.0 0.86 282
4519 4519 23S 25.1 564 577   v4 C:G cWW       Weak A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9 37
4520 4520 23S 25.1 564 577   v4 C:G cWW       Weak C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97 100
4521 4521 23S 25.1 564 577   v4 C:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.79 207
4522 4522 23S 25.1 564 577   v4 C:G cWW       Weak M 3 2 1 0.4 0.5 0.98 1.48 0.98 0.99 1.47 1.45 0.0 0.8 262
4656 4656 23S 27 600 657   v4 G:U cWW       Weak T 4 6 1 0.2 0.01 0.0 0.01 0.28 1.0 0.6 0.05 0.0 0.64 882
4657 4657 23S 27 600 657   v4 G:U cWW       Weak 3 2 6 1 0.25 0.01 0.0 0.01 0.35 1.0 1.89 1.05 0.0 0.82 520
4658 4658 23S 27 600 657   v4 G:U cWW       Weak B 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.86 282
4659 4659 23S 27 600 657   v4 G:U cWW       Weak A 1 1 0 0.0 0.0 0.0 0.0 0.3 1.0 1.59 1.25 0.0 0.9 37
4660 4660 23S 27 600 657   v4 G:U cWW       Weak C 1 0 0 0.0 0.0 0.0 0.0 0.02 1.0 1.86 2.0 0.0 0.97 100
4661 4661 23S 27 600 657   v4 G:U cWW       Weak E 1 5 1 0.33 0.06 0.0 0.06 0.85 1.0 1.85 1.34 0.0 0.76 201
4662 4662 23S 27 600 657   v4 G:U cWW       Weak M 1 0 0 0.0 0.0 0.0 0.0 0.09 1.0 -0.42 -0.37 0.0 0.14 262
4754 4754 23S 31 641 647   v4 U:G cWW       Weak T 16 10 3 0.23 0.05 0.0 0.05 0.17 0.98 -0.33 -0.2 0.0 0.41 883
4755 4755 23S 31 641 647   v4 U:G cWW       Weak 3 12 1 0 0.0 0.0 0.0 0.0 0.16 1.0 -0.14 0.22 0.0 0.5 521
4756 4756 23S 31 641 647   v4 U:G cWW       Weak B 8 1 0 0.0 0.0 0.0 0.0 0.15 1.0 1.41 1.97 0.0 0.86 281
4757 4757 23S 31 641 647   v4 U:G cWW       Weak A 4 0 0 0.0 0.0 0.0 0.0 0.27 1.0 0.67 1.43 0.0 0.83 37
4758 4758 23S 31 641 647   v4 U:G cWW       Weak C 2 7 1 0.22 0.14 0.0 0.14 0.1 0.96 1.76 1.36 0.0 0.97 100
4759 4759 23S 31 641 647   v4 U:G cWW       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 203
4760 4760 23S 31 641 647   v4 U:G cWW       Weak M 2 2 2 1.0 0.4 0.68 1.08 0.68 0.74 -0.35 -0.32 0.0 0.06 262
4761 4761 23S 32 671 809   v4 C:G cWW       Weak T 2 3 1 0.4 0.77 1.0 1.77 1.0 1.0 1.84 1.8 0.0 0.8 845
4762 4762 23S 32 671 809   v4 C:G cWW       Weak 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.97 0.0 0.77 483

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");