Base-pair collective (covariation) scores

832 rows where conformation = "cWW", group_code = "E" and molecule = "23S" sorted by position_1

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Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE

strength 5

molecule 1

  • 23S · 832 ✖

group_code 1

conformation 1

  • cWW · 832 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3352 3352 23S 1 1 2902   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.35 -0.29 0.05 0.0 40
3359 3359 23S 1 2 2901   v4 G:C cWW       Strong E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.39 -0.29 0.04 0.0 40
3366 3366 23S 1 3 2900   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.33 -0.29 0.05 0.0 41
3373 3373 23S 1 4 2899   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.47 -0.35 0.05 0.0 41
3380 3380 23S 1 5 2898   v4 A:U cWW       Strong E 2 0 0 0.0 0.0 0.0 0.0 0.0 1.0 -0.48 -0.49 0.06 0.0 41
3387 3387 23S 1 6 2897   v4 A:U cWW       Strong E 2 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.55 -0.45 0.05 0.0 41
3394 3394 23S 1 7 2896   v4 G:C cWW       Strong E 3 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.66 -0.45 0.03 0.0 41
3401 3401 23S 1 8 2895   v4 C:G cWW       Weak E 6 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.91 -0.43 0.01 0.0 41
3408 3408 23S 2 15 525   v4 G:U cWW       Strong E 8 11 2 0.21 0.48 0.86 1.34 0.8 0.89 0.86 0.91 0.0 0.43 116
3415 3415 23S 2 16 524   v4 C:G cWW       Strong E 6 15 2 0.19 0.53 0.83 1.36 0.83 0.96 0.71 0.63 0.0 0.44 116
3422 3422 23S 2 17 523   v4 G:C cWW       Strong E 6 7 4 0.61 0.88 0.95 1.83 0.95 0.96 0.72 0.67 0.0 0.43 116
3429 3429 23S 2 18 522   v4 U:A cWW       Strong E 6 13 1 0.1 0.51 0.83 1.35 0.83 0.94 0.86 0.42 0.0 0.44 116
3436 3436 23S 2 19 521   v4 A:U cWW       Strong E 9 17 7 0.54 0.83 0.91 1.75 0.91 0.94 0.31 0.47 0.0 0.44 116
3443 3443 23S 2 20 520   v4 C:G cWW       Strong E 9 9 4 0.44 0.84 0.94 1.78 0.94 0.96 0.42 0.51 0.0 0.44 116
3450 3450 23S 2 21 519   v4 A:U cWW       Strong E 11 16 7 0.52 0.57 0.72 1.29 0.72 0.97 0.53 0.88 0.0 0.44 116
3457 3457 23S 2 22 518   v4 C:G cWW       Strong E 2 4 1 0.33 0.4 0.97 1.37 0.97 0.98 1.74 1.72 0.0 0.44 116
3464 3464 23S 2 23 517   v4 G:C cWW       Strong E 8 9 3 0.35 0.73 0.87 1.6 0.87 0.96 0.87 0.86 0.0 0.44 116
3471 3471 23S 2 24 516   v4 G:C cWW       Strong E 6 10 3 0.38 0.88 0.96 1.84 0.96 0.96 0.57 0.62 0.0 0.44 116
3478 3478 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong E 7 8 5 0.67 0.92 0.96 1.88 0.96 1.0 0.15 0.41 0.01 0.44 117
3485 3485 23S 3 31 474   v4 C:G cWW       Strong E 4 6 2 0.4 0.89 0.95 1.85 0.95 0.99 0.42 0.34 0.06 0.42 116
3492 3492 23S 3 32 473   v4 C:G cWW       Strong E 3 2 2 0.8 0.85 0.98 1.83 0.98 0.99 1.28 1.25 0.04 0.43 116
3499 3499 23S 4 35 445   v4 G:C cWW       Strong E 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.71 1.93 0.01 0.43 115
3506 3506 23S 4 36 444   v4 G:C cWW       Strong E 1 2 0 0.0 1.0 1.0 2.0 1.0 1.0 1.7 1.85 0.01 0.43 116
3513 3513 23S 4 37 442   v4 C:G cWW       Strong E 7 8 2 0.27 0.45 0.86 1.31 0.86 1.0 0.83 1.29 0.0 0.43 115
3520 3520 23S 4 38 441   v4 A:U cWW       Strong E 3 3 3 1.0 1.0 1.0 2.0 1.0 1.0 1.31 1.69 0.0 0.43 115
3527 3527 23S 4 39 440   v4 G:C cWW       Strong E 4 8 3 0.5 1.0 1.0 2.0 1.0 1.0 1.0 0.96 0.0 0.43 115
3534 3534 23S 4 40 439   v4 U:A cWW       Strong E 11 18 6 0.41 0.92 0.95 1.87 0.95 0.99 0.02 0.18 0.0 0.43 115
3541 3541 23S 4 41 438   v4 C:G cWW       Strong E 9 17 6 0.46 0.98 0.99 1.97 0.99 0.99 0.51 0.68 0.0 0.43 115
3548 3548 23S 4 42 437   v4 A:U cWW       Strong E 11 17 8 0.57 0.95 0.98 1.94 0.98 0.99 0.6 0.48 0.0 0.43 115
3555 3555 23S 4 43 436   v4 G:C cWW       Strong E 6 14 6 0.6 0.94 0.98 1.92 0.98 0.98 0.51 0.56 0.01 0.43 116
3562 3562 23S 4 44 434   v4 A:U cWW       Strong E 8 22 1 0.07 0.31 0.58 0.89 0.58 0.66 0.61 0.0 0.01 0.43 115
3569 3569 23S 4 45 433   v4 G:C cWW       Strong E 6 17 2 0.17 0.17 0.0 0.17 0.16 0.33 0.39 -0.23 0.07 0.4 116
3576 3576 23S 4.1 46 179   v4 G:C cWW       Strong E 0 18 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.25 0.73 0.41 0.04 116
3583 3583 23S 4.1 47 178   v4 C:G cWW       Strong E 1 2 1 0.67 1.0 1.0 2.0 1.0 1.0 1.84 1.72 0.0 0.43 114
3597 3597 23S 5 54 116   v4 G:C cWW       Strong E 0 4 0 0.0 0.0 0.0 0.0 0.25 0.99 1.91 1.0 0.0 0.44 117
3604 3604 23S 5 55 115   v4 G:C cWW       Strong E 7 4 2 0.36 0.87 0.97 1.83 0.97 1.0 1.04 1.04 0.0 0.44 117
3611 3611 23S 5 56 114   v4 A:U cWW       Strong E 3 6 5 1.0 1.0 1.0 2.0 1.0 1.0 0.81 0.85 0.0 0.44 117
3618 3618 23S 6 57 70   v4 C:G cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.91 1.78 0.01 0.44 118
3625 3625 23S 6 58 69   v4 G:C cWW       Strong E 2 3 1 0.4 0.2 0.0 0.2 0.97 0.99 1.81 1.56 0.01 0.45 118
3632 3632 23S 6 59 68   v4 U:G cWW       Strong E 5 3 2 0.5 0.44 0.87 1.32 0.87 1.0 1.22 1.31 0.01 0.45 118
3639 3639 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong E 5 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.38 -0.05 0.45 0.0 117
3646 3646 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong E 7 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.23 -0.05 0.45 0.0 117
3653 3653 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant E 4 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.04 -0.05 0.45 0.0 118
3660 3660 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.26 -0.05 0.45 0.0 118
3667 3667 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak E 7 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.25 -0.05 0.45 0.0 118
3681 3681 23S 7 76 110   v4 C:G cWW       Strong E 8 2 0 0.0 0.44 0.74 1.18 0.16 0.71 0.48 0.04 0.0 0.4 119
3688 3688 23S 7 77 109   v4 G:C cWW       Strong E 6 5 1 0.18 0.15 0.0 0.15 0.32 0.34 0.21 1.07 0.03 0.42 119
3695 3695 23S 7 78 108   v4 U:G cWW       Strong E 2 7 2 0.44 0.5 0.74 1.25 0.74 0.93 0.05 0.48 0.03 0.42 119
3702 3702 23S 7 79 107   v4 C:G cWW       Strong E 9 3 0 0.0 0.35 0.88 1.23 0.88 0.97 1.0 0.76 0.01 0.42 119
3709 3709 23S 7 80 106   v4 G:C cWW       Strong E 4 5 1 0.22 0.71 0.92 1.63 0.92 0.95 0.53 0.49 0.01 0.42 119
3716 3716 23S 7 81 105   v4 G:C cWW       Strong E 6 0 0 0.0 1.0 1.0 2.0 0.5 1.0 0.16 -0.17 0.37 0.01 119
3730 3730 23S 7 85 97   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.05 -0.05 0.0 0.0 120
3737 3737 23S 7 86 96   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.05 -0.05 0.0 0.0 120
3744 3744 23S 7 87 95   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.05 -0.05 0.0 0.0 120
3751 3751 23S 8 121 130   v4 G:C cWW       Strong E 1 2 1 0.67 0.09 0.0 0.09 0.9 0.95 1.06 0.92 0.02 0.41 120
3758 3758 23S 8 122 129   v4 G:C cWW       Strong E 4 2 2 0.67 0.73 0.96 1.7 0.96 0.99 0.66 0.75 0.0 0.4 120
3765 3765 23S 8 123 128   v4 G:C cWW       Strong E 0 0 0 0.0 0.67 0.75 1.42 0.75 1.0 -0.24 -0.19 0.01 0.01 120
3772 3772 23S 9 131 148   v4 A:U cWW       Strong E 5 6 4 0.73 0.68 0.9 1.57 0.9 1.0 0.17 0.28 0.04 0.37 122
3779 3779 23S 9 132 147   v4 G:C cWW       Strong E 4 4 4 1.0 0.81 0.95 1.76 0.95 1.0 -0.02 0.33 0.04 0.36 121
3786 3786 23S 9 133 146   v4 U:A cWW       Strong E 11 11 11 1.0 0.7 0.83 1.53 0.83 0.84 -0.26 -0.1 0.0 0.4 122
3793 3793 23S 9 134 145   v4 G:C cWW       Strong E 7 8 6 0.8 0.36 0.72 1.09 0.72 0.85 0.1 -0.16 0.02 0.38 122
3800 3800 23S 9 135 144   v4 U:A cWW       Strong E 9 11 6 0.6 0.51 0.74 1.25 0.74 0.79 -0.26 -0.51 0.02 0.37 122
3807 3807 23S 9 136 143   v4 G:C cWW       Strong E 9 8 5 0.59 0.65 0.74 1.4 0.74 0.79 -0.7 -0.67 0.02 0.34 122
3814 3814 23S 9 137 142   v4 U:A cWW       Strong E 7 10 7 0.82 0.39 0.62 1.0 0.56 0.8 -0.58 -0.73 0.04 0.32 122
3821 3821 23S 10 150 176   v4 U:A cWW       Strong E 5 7 5 0.83 0.98 0.99 1.97 0.99 0.99 0.4 0.32 0.0 0.41 120
3828 3828 23S 10 151 175   v4 C:G cWW       Strong E 4 8 3 0.5 0.42 0.72 1.14 0.72 0.95 0.18 0.09 0.0 0.41 120
3835 3835 23S 10 152 174   v4 A:U cWW       Strong E 8 10 3 0.33 0.19 0.0 0.19 0.6 0.84 0.18 0.52 0.01 0.4 120
3842 3842 23S 10 153 173   v4 U:A cWW       Strong E 7 10 7 0.82 0.84 0.96 1.8 0.96 0.97 0.37 0.44 0.0 0.41 120
3849 3849 23S 10 154 172   v4 U:A cWW       Strong E 6 8 5 0.71 0.89 0.97 1.86 0.97 0.98 0.26 0.46 0.0 0.41 120
3856 3856 23S 10 155 171   v4 A:U cWW       Strong E 7 7 4 0.57 0.66 0.91 1.56 0.91 0.95 0.26 0.42 0.01 0.41 120
3863 3863 23S 10 156 170   v4 A:U cWW       Strong E 9 12 6 0.57 0.78 0.91 1.69 0.91 0.94 -0.09 -0.05 0.0 0.41 120
3870 3870 23S 10 157 169   v4 C:G cWW       Strong E 5 9 5 0.71 0.73 0.85 1.58 0.85 0.97 -0.2 0.07 0.02 0.38 120
3877 3877 23S 10 158 168   v4 U:G cWW       Weak E 5 6 3 0.55 0.56 0.93 1.5 0.93 0.94 0.53 0.68 0.0 0.4 120
3884 3884 23S 11 183 214   v4 C:G cWW       Strong E 2 1 1 0.67 0.9 0.99 1.89 0.99 0.99 1.6 1.63 0.0 0.68 178
3891 3891 23S 11 184 212   v4 C:G cWW       Strong E 4 4 4 1.0 1.0 1.0 2.0 1.0 1.0 1.52 1.54 0.0 0.68 178
3898 3898 23S 11 185 211   v4 G:C cWW       Strong E 4 4 3 0.75 0.8 0.99 1.79 0.99 0.99 1.67 1.69 0.0 0.68 179
3905 3905 23S 11 186 210   v4 G:C cWW       Strong E 6 6 5 0.83 0.9 0.98 1.89 0.98 0.99 1.13 1.1 0.0 0.68 179
3912 3912 23S 11 187 209   v4 G:C cWW       Strong E 2 1 1 0.67 0.95 0.99 1.94 0.99 1.0 1.51 1.54 0.0 0.68 178
3919 3919 23S 11 188 208   v4 G:C cWW       Strong E 6 3 1 0.22 0.15 0.0 0.15 0.88 0.89 1.35 1.73 0.0 0.68 179
3926 3926 23S 11 194 201   v4 G:C cWW       Strong E 1 0 1 1.0 1.0 1.0 2.0 1.0 1.0 1.85 1.85 0.0 0.68 179
3940 3940 23S 12 224 231   v4 U:A cWW       Strong E 6 7 6 0.92 0.98 0.99 1.97 0.99 0.99 1.09 1.07 0.0 0.75 198
3947 3947 23S 12 225 230   v4 C:G cWW       Strong E 5 7 5 0.83 0.88 0.97 1.85 0.97 0.97 1.2 1.08 0.0 0.74 197
3961 3961 23S 13 235 262   v4 U:A cWW       Strong E 3 6 4 0.89 0.58 0.97 1.56 0.97 0.99 1.62 1.62 0.01 0.74 199
3968 3968 23S 13 236 261   v4 C:G cWW       Strong E 9 8 6 0.71 0.91 0.97 1.88 0.97 0.98 0.84 0.69 0.01 0.75 199
3975 3975 23S 13 237 260   v4 C:G cWW       Strong E 3 4 1 0.29 0.41 0.93 1.34 0.93 0.99 1.53 1.44 0.02 0.74 200
3982 3982 23S 13 238 259   v4 C:G cWW       Strong E 5 5 5 1.0 1.0 1.0 2.0 1.0 1.0 1.43 1.42 0.0 0.76 201
3989 3989 23S 13 239 258   v4 C:G cWW       Significant E 22 18 7 0.35 0.36 0.55 0.91 0.3 0.34 0.84 0.47 0.0 0.76 200
3996 3996 23S 13 245 253   v4 G:C cWW       Strong E 7 7 4 0.57 0.31 0.68 0.98 0.68 0.8 1.12 1.03 0.0 0.76 201
4003 4003 23S 13 246 252   v4 C:G cWW       Strong E 7 8 7 0.93 0.91 0.99 1.9 0.99 1.0 1.34 1.43 0.0 0.76 201
4017 4017 23S 14 266 426   v4 G:C cWW       Strong E 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.45 1.45 0.0 0.77 202
4024 4024 23S 14 267 425   v4 C:G cWW       Strong E 7 5 5 0.83 0.86 0.99 1.85 0.99 1.0 1.61 1.67 0.0 0.77 202
4031 4031 23S 14 268 424   v4 C:G cWW       Strong E 11 13 9 0.75 0.86 0.94 1.79 0.94 0.99 1.01 1.04 0.0 0.77 202
4038 4038 23S 16 271 366   v4 G:C cWW       Strong E 15 5 2 0.2 0.37 0.52 0.89 0.34 0.52 -0.47 -0.95 0.31 0.32 204
4045 4045 23S 16 272 365   v4 A:U cWW       Strong E 19 6 1 0.08 0.43 0.59 1.03 0.17 0.33 -0.58 -0.79 0.24 0.33 203
4052 4052 23S 16 273 364   v4 G:C cWW       Strong E 17 10 5 0.37 0.3 0.52 0.82 0.23 0.31 -0.72 -0.77 0.1 0.4 203
4059 4059 23S 16 274 363   v4 C:G cWW       Weak E 15 8 2 0.17 0.31 0.51 0.82 0.37 0.39 -0.64 -0.88 0.13 0.41 204
4066 4066 23S 18 281 359   v4 C:G cWW       Weak E 6 17 1 0.09 0.34 0.57 0.91 0.51 0.55 -0.73 -0.56 0.35 0.2 204
4073 4073 23S 18 282 358   v4 A:U cWW       Strong E 7 21 3 0.21 0.38 0.53 0.9 0.32 0.39 -0.84 -0.43 0.39 0.22 204
4080 4080 23S 18 283 357   v4 G:C cWW       Strong E 10 17 2 0.15 0.43 0.55 0.98 0.55 0.59 -0.97 -0.52 0.36 0.24 203
4087 4087 23S 18 284 356   v4 U:G cWW       Weak E 17 19 6 0.33 0.29 0.42 0.7 0.34 0.53 -0.71 -0.44 0.06 0.54 204

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");