Base-pair collective (covariation) scores

1,176 rows where conformation = "cWW", group_code = "A" and strength = "Strong" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: reference_base_pair, tertiary_type, Xch, Ych, PE, DfDel

molecule 2

strength 1

  • Strong · 1,176 ✖

group_code 1

  • A · 1,176 ✖

conformation 1

  • cWW · 1,176 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3350 3350 23S 1 1 2902   v4 G:C cWW       Strong A 3 0 0 0.0 0.43 0.64 1.06 0.55 0.73 -0.71 -0.97 0.05 0.27 33
3357 3357 23S 1 2 2901   v4 G:C cWW       Strong A 2 2 0 0.0 0.67 0.85 1.51 0.77 0.77 -0.42 -0.8 0.0 0.32 33
3364 3364 23S 1 3 2900   v4 U:A cWW       Strong A 4 2 1 0.33 0.83 0.94 1.77 0.69 0.69 -0.65 -0.81 0.07 0.39 33
3371 3371 23S 1 4 2899   v4 U:A cWW       Strong A 6 4 3 0.6 0.93 0.95 1.88 0.95 0.95 -0.51 -0.81 0.15 0.51 33
3378 3378 23S 1 5 2898   v4 A:U cWW       Strong A 5 5 3 0.6 0.8 0.93 1.73 0.93 0.93 -0.12 -0.33 0.02 0.66 33
3385 3385 23S 1 6 2897   v4 A:U cWW       Strong A 3 4 2 0.57 0.71 0.93 1.64 0.93 0.93 0.4 0.15 0.0 0.68 33
3392 3392 23S 1 7 2896   v4 G:C cWW       Strong A 2 3 0 0.0 0.82 0.9 1.72 0.9 0.97 0.69 -0.01 0.07 0.73 33
4 4 16S 1 9 25   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.94 2.0 0.0 0.56 148
11 11 16S 1 10 24   v4 A:U cWW       Strong A 3 2 2 0.8 0.97 0.99 1.97 0.99 1.0 1.17 1.21 0.0 0.56 147
18 18 16S 1 11 23   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.57 151
25 25 16S 1 12 22   v4 U:G cWW       Strong A 2 3 2 0.8 0.86 0.99 1.84 0.91 0.99 1.57 1.53 0.0 0.56 149
3406 3406 23S 2 15 525   v4 G:U cWW       Strong A 5 4 1 0.22 0.3 0.61 0.91 0.17 0.67 0.33 0.77 0.0 0.88 36
3413 3413 23S 2 16 524   v4 C:G cWW       Strong A 2 5 1 0.29 0.32 0.64 0.95 0.64 1.0 1.24 0.43 0.0 0.88 36
39 39 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong A 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.93 0.0 0.56 148
3420 3420 23S 2 17 523   v4 G:C cWW       Strong A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.7 0.0 0.88 36
46 46 16S 2 18 917   v4 C:G cWW   3°: pseudoknot   Strong A 1 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.94 1.96 0.0 0.56 149
3427 3427 23S 2 18 522   v4 U:A cWW       Strong A 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.7 0.0 0.88 36
53 53 16S 2 19 916   v4 A:U cWW   3°: pseudoknot   Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.96 0.0 0.57 150
3434 3434 23S 2 19 521   v4 A:U cWW       Strong A 5 3 2 0.5 0.79 0.89 1.68 0.89 0.92 0.61 0.87 0.0 0.88 36
3441 3441 23S 2 20 520   v4 C:G cWW       Strong A 6 6 4 0.67 0.58 0.78 1.36 0.78 1.0 0.27 0.41 0.0 0.88 36
3448 3448 23S 2 21 519   v4 A:U cWW       Strong A 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.5 1.51 0.0 0.88 36
3455 3455 23S 2 22 518   v4 C:G cWW       Strong A 3 3 3 1.0 1.0 1.0 2.0 1.0 1.0 0.76 0.77 0.0 0.88 36
3462 3462 23S 2 23 517   v4 G:C cWW       Strong A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.7 0.0 0.88 36
3469 3469 23S 2 24 516   v4 G:C cWW       Strong A 0 1 0 0.0 0.0 0.0 0.0 0.75 1.0 2.0 1.2 0.0 0.88 36
60 60 16S 3 27 556   v4 G:C cWW       Strong A 5 3 2 0.5 0.87 0.95 1.83 0.95 0.95 0.84 1.0 0.0 0.58 155
67 67 16S 3 28 555   v4 A:U cWW       Strong A 4 5 2 0.44 0.7 0.87 1.57 0.87 0.99 0.9 0.61 0.01 0.62 168
74 74 16S 3 29 554   v4 U:A cWW       Strong A 13 11 6 0.5 0.69 0.87 1.56 0.87 0.97 0.62 1.06 0.01 0.66 177
81 81 16S 3 30 553   v4 U:A cWW       Strong A 8 8 6 0.75 0.88 0.94 1.81 0.94 0.99 0.45 0.48 0.0 0.67 178
3476 3476 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong A 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 0.85 0.87 0.0 0.88 36
3483 3483 23S 3 31 474   v4 C:G cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
88 88 16S 3 32 552   v4 A:U cWW       Strong A 1 1 1 1.0 0.67 0.99 1.66 0.99 0.99 1.87 1.93 0.0 0.67 178
3490 3490 23S 3 32 473   v4 C:G cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
95 95 16S 3 33 551   v4 A:U cWW       Strong A 5 6 3 0.55 0.98 0.99 1.98 0.99 0.99 1.16 1.17 0.0 0.69 183
102 102 16S 3 34 550   v4 C:G cWW       Strong A 4 0 0 0.0 0.0 0.0 0.0 0.29 1.0 1.13 2.0 0.0 0.69 183
3497 3497 23S 4 35 445   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
116 116 16S 3 36 548   v4 C:G cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.95 0.0 0.69 184
3504 3504 23S 4 36 444   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
3511 3511 23S 4 37 442   v4 C:G cWW       Strong A 1 0 0 0.0 0.5 0.97 1.47 0.97 1.0 1.69 1.82 0.0 0.88 36
3518 3518 23S 4 38 441   v4 A:U cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
3525 3525 23S 4 39 440   v4 G:C cWW       Strong A 3 3 3 1.0 1.0 1.0 2.0 1.0 1.0 1.29 1.3 0.0 0.88 36
137 137 16S 4 40 402   v4 C:G cWW       Strong A 10 11 10 0.95 0.97 0.99 1.96 0.99 1.0 0.61 0.56 0.0 0.73 195
3532 3532 23S 4 40 439   v4 U:A cWW       Strong A 0 0 0 0.0 1.0 1.0 2.0 1.0 1.0 1.59 1.59 0.0 0.88 36
144 144 16S 4 41 401   v4 G:C cWW       Strong A 5 5 5 1.0 0.94 0.99 1.94 0.99 1.0 1.52 1.54 0.0 0.73 193
3539 3539 23S 4 41 438   v4 C:G cWW       Strong A 3 3 3 1.0 1.0 1.0 2.0 1.0 1.0 1.19 1.2 0.0 0.88 36
151 151 16S 4 42 400   v4 G:C cWW       Strong A 2 3 1 0.4 0.44 0.97 1.42 0.97 1.0 1.86 1.58 0.0 0.74 197
3546 3546 23S 4 42 437   v4 A:U cWW       Strong A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.7 0.0 0.88 36
158 158 16S 4 43 399   v4 C:G cWW       Strong A 7 7 7 1.0 1.0 1.0 2.0 1.0 1.0 0.84 0.92 0.0 0.75 198
3553 3553 23S 4 43 436   v4 G:C cWW       Strong A 2 0 0 0.0 0.0 0.0 0.0 0.12 0.62 -0.63 -0.43 0.02 0.2 36
165 165 16S 4 44 398   v4 A:U cWW       Strong A 15 15 12 0.8 0.9 0.97 1.87 0.97 0.99 0.91 0.92 0.0 0.75 199
3560 3560 23S 4 44 434   v4 A:U cWW       Strong A 2 2 2 1.0 0.5 0.86 1.36 0.86 0.86 0.99 0.75 0.0 0.88 36
172 172 16S 4 45 396   v4 G:C cWW       Strong A 13 9 5 0.46 0.68 0.78 1.46 0.78 0.99 0.1 0.18 0.0 0.71 188
3567 3567 23S 4 45 433   v4 G:C cWW       Strong A 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.42 1.43 0.0 0.88 36
179 179 16S 4 46 395   v4 G:C cWW       Strong A 8 10 6 0.67 0.74 0.91 1.65 0.91 0.99 0.65 0.68 0.0 0.76 201
3574 3574 23S 4.1 46 179   v4 G:C cWW       Strong A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.69 0.0 0.88 36
186 186 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong A 4 4 4 1.0 0.77 0.98 1.75 0.98 0.98 1.64 1.47 0.02 0.73 199
3581 3581 23S 4.1 47 178   v4 C:G cWW       Strong A 3 1 1 0.5 0.46 0.83 1.29 0.83 1.0 0.9 1.28 0.0 0.88 36
193 193 16S 5 52 359   v4 C:G cWW       Strong A 1 1 1 1.0 0.5 0.99 1.49 0.99 0.99 1.86 1.73 0.02 0.73 199
200 200 16S 5 53 358   v4 A:U cWW       Strong A 0 1 0 0.0 0.29 0.97 1.26 0.97 0.97 1.92 1.71 0.0 0.76 201
3595 3595 23S 5 54 116   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
3602 3602 23S 5 55 115   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
3609 3609 23S 5 56 114   v4 A:U cWW       Strong A 5 5 5 1.0 1.0 1.0 2.0 1.0 1.0 0.61 0.61 0.0 0.88 36
221 221 16S 5 57 355   v4 G:C cWW       Strong A 0 1 0 0.0 0.0 0.0 0.0 0.98 0.98 2.0 1.67 0.02 0.73 200
3616 3616 23S 6 57 70   v4 C:G cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
3623 3623 23S 6 58 69   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
3630 3630 23S 6 59 68   v4 U:G cWW       Strong A 1 0 0 0.0 0.0 0.0 0.0 0.19 1.0 1.29 2.0 0.0 0.88 36
235 235 16S 6 61 106   v4 G:C cWW       Strong A 0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.96 0.0 0.77 203
3637 3637 23S 6.1 61 93   v4 C:G cWW   3°: pseudoknot   Strong A 1 3 1 0.5 0.85 0.94 1.79 0.94 0.94 1.11 0.92 0.0 0.88 36
3644 3644 23S 6.1 62 92   v4   cWW   3°: pseudoknot   Strong A 1 2 1 0.67 0.5 0.97 1.47 0.97 0.97 1.82 1.64 0.0 0.88 36
249 249 16S 6 63 104   v4 C:G cWW       Strong A 10 9 5 0.53 0.67 0.94 1.61 0.94 0.99 1.27 1.43 0.0 0.77 202
3658 3658 23S 6.1 65 89   v4 U:A cWW   3°: pseudoknot   Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
256 256 16S 6 66 103   v4 A:U cWW       Strong A 10 11 9 0.86 0.96 0.98 1.94 0.98 0.99 0.68 0.83 0.01 0.74 199
263 263 16S 6 67 102   v4 C:G cWW       Strong A 11 11 11 1.0 1.0 1.0 2.0 1.0 1.0 0.29 0.23 0.0 0.76 201
277 277 16S 6 69 99   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 202
284 284 16S 6 70 98   v4 U:A cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 202
291 291 16S 6 73 97   v4 C:G cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 202
298 298 16S 6 74 96   v4 A:U cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 202
305 305 16S 6 75 95   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 202
312 312 16S 6 76 93   v4 G:U cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.04 0.04 -0.17 -0.2 0.0 0.0 201
3679 3679 23S 7 76 110   v4 C:G cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
319 319 16S 6 77 92   v4 A:U cWW       Strong A 3 1 0 0.0 0.53 0.78 1.31 0.78 0.97 -0.65 -0.53 0.01 0.14 201
3686 3686 23S 7 77 109   v4 G:C cWW       Strong A 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.24 1.24 0.0 0.88 36
326 326 16S 6 78 91   v4 A:U cWW       Strong A 4 5 4 0.89 0.74 0.92 1.66 0.92 0.96 -0.72 -0.65 0.01 0.27 202
3693 3693 23S 7 78 108   v4 U:G cWW       Strong A 3 3 3 1.0 1.0 1.0 2.0 1.0 1.0 0.88 0.88 0.0 0.88 36
333 333 16S 6 79 90   v4 G:C cWW       Strong A 8 5 4 0.61 0.76 0.86 1.61 0.86 1.0 -0.84 -0.78 0.01 0.29 203
3700 3700 23S 7 79 107   v4 C:G cWW       Strong A 5 5 5 1.0 1.0 1.0 2.0 1.0 1.0 0.37 0.37 0.0 0.88 36
340 340 16S 6 80 89   v4 A:U cWW       Strong A 9 8 7 0.82 0.96 0.98 1.95 0.98 1.0 -0.62 -0.65 0.02 0.58 196
3707 3707 23S 7 80 106   v4 G:C cWW       Strong A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.59 1.59 0.0 0.88 36
347 347 16S 6 81 88   v4 A:U cWW       Strong A 12 13 10 0.8 0.97 0.98 1.96 0.98 0.99 0.14 0.13 0.0 0.74 198
3714 3714 23S 7 81 105   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 36
354 354 16S 6 82 87   v4 G:C cWW       Strong A 16 15 14 0.9 0.89 0.94 1.83 0.94 0.98 0.26 0.27 0.0 0.77 202
3728 3728 23S 7 85 97   v4 G:C cWW       Strong A 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.69 0.0 0.88 36
3735 3735 23S 7 86 96   v4 G:C cWW       Strong A 2 2 2 1.0 1.0 1.0 2.0 1.0 1.0 1.02 1.02 0.0 0.88 36
3742 3742 23S 7 87 95   v4 U:A cWW       Strong A 2 3 2 0.8 0.83 0.97 1.81 0.92 0.92 1.28 1.18 0.0 0.88 36
361 361 16S 6.1 113 314   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.85 0.0 0.77 203
368 368 16S 6.1 114 313   v4 U:A cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.85 0.0 0.77 204
375 375 16S 6.1 115 312   v4 G:C cWW       Strong A 3 3 3 1.0 0.88 0.97 1.86 0.97 0.97 1.31 1.2 0.0 0.77 203
3749 3749 23S 8 121 130   v4 G:C cWW       Strong A 1 3 1 0.5 0.06 0.0 0.06 0.44 0.97 1.59 0.87 0.0 0.88 36
382 382 16S 7 122 239   v4 G:U cWW       Strong A 1 5 0 0.0 0.04 0.0 0.04 0.04 0.04 1.83 1.4 0.0 0.77 204
3756 3756 23S 8 122 129   v4 G:C cWW       Strong A 0 0 0 0.0 1.0 1.0 2.0 1.0 1.0 1.59 1.59 0.0 0.88 36
389 389 16S 7 123 238   v4 U:A cWW       Strong A 0 0 0 0.0 1.0 1.0 2.0 1.0 1.0 1.96 1.96 0.0 0.78 206

Next page

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");