Base-pair collective (covariation) scores

8 rows where conformation = "cWW", group_code = 3 and strength = "Significant" sorted by position_1

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Suggested facets: reference_base_pair, Xch, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, DfDel, PNuc, Seq

strength 1

  • Significant · 8 ✖

molecule 1

group_code 1

conformation 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3649 3649 23S 6.1 64 90   v4 A:U cWW   3°: pseudoknot   Significant 3 15 11 8 0.61 0.45 0.67 1.12 0.59 0.59 0.89 -0.72 0.19 0.47 411
3985 3985 23S 13 239 258   v4 C:G cWW       Significant 3 52 42 18 0.38 0.22 0.47 0.69 0.37 0.7 0.71 0.13 0.0 0.81 512
4104 4104 23S 18 287 353   v4 G:C cWW       Significant 3 52 50 19 0.37 0.4 0.5 0.9 0.5 0.62 -0.35 -0.31 0.02 0.71 523
5329 5329 23S 38 874 903   v4 G:C cWW       Significant 3 9 16 6 0.48 0.09 0.0 0.09 0.37 0.59 1.42 0.2 0.0 0.77 493
5644 5644 23S 42 1035 1120   v4 U:G cWW       Significant 3 0 1 0 0.0 0.0 0.0 0.0 0.0 0.99 1.93 1.89 0.0 0.76 482
6239 6239 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant 3 8 22 2 0.13 0.78 0.9 1.68 0.63 0.65 -0.67 0.12 0.33 0.43 468
8017 8017 23S 77 2124 2174   v4 G:C cWW       Significant 3 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.69 437
8542 8542 23S 88 2401 2415   v4 U:G cWW       Significant 3 21 10 8 0.52 0.1 0.0 0.1 0.35 0.94 0.7 1.49 0.0 0.69 437

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");