Base-pair collective (covariation) scores

9,044 rows where conformation = "cWW" sorted by position_1

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group_code 7

  • 3 1,292
  • A 1,292
  • B 1,292
  • C 1,292
  • E 1,292
  • M 1,292
  • T 1,292

strength 5

molecule 2

conformation 1

  • cWW · 9,044 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3347 3347 23S 1 1 2902   v4 G:C cWW       Strong T 22 22 9 0.41 0.64 0.86 1.5 0.86 0.94 -0.54 -0.28 0.11 0.21 327
3348 3348 23S 1 1 2902   v4 G:C cWW       Strong 3 14 10 3 0.25 0.61 0.9 1.5 0.9 0.95 -0.19 -0.23 0.04 0.27 246
3349 3349 23S 1 1 2902   v4 G:C cWW       Strong B 11 10 3 0.29 0.67 0.92 1.58 0.92 0.96 0.63 0.73 0.05 0.49 173
3350 3350 23S 1 1 2902   v4 G:C cWW       Strong A 3 0 0 0.0 0.43 0.64 1.06 0.55 0.73 -0.71 -0.97 0.05 0.27 33
3351 3351 23S 1 1 2902   v4 G:C cWW       Strong C 2 3 1 0.4 0.64 0.77 1.4 0.77 0.94 -0.53 0.68 0.78 0.17 47
3352 3352 23S 1 1 2902   v4 G:C cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.35 -0.29 0.05 0.0 40
3353 3353 23S 1 1 2902   v4 G:C cWW       Strong M 6 9 5 0.67 0.58 0.71 1.29 0.71 0.86 -0.64 -0.71 0.02 0.09 34
3354 3354 23S 1 2 2901   v4 G:C cWW       Strong T 25 23 8 0.33 0.76 0.88 1.65 0.88 0.92 -0.7 -0.5 0.08 0.23 326
3355 3355 23S 1 2 2901   v4 G:C cWW       Strong 3 13 13 4 0.31 0.8 0.92 1.73 0.92 0.95 -0.43 -0.33 0.03 0.29 246
3356 3356 23S 1 2 2901   v4 G:C cWW       Strong B 10 11 4 0.38 0.82 0.94 1.75 0.94 0.96 0.52 0.8 0.01 0.53 173
3357 3357 23S 1 2 2901   v4 G:C cWW       Strong A 2 2 0 0.0 0.67 0.85 1.51 0.77 0.77 -0.42 -0.8 0.0 0.32 33
3358 3358 23S 1 2 2901   v4 G:C cWW       Strong C 3 3 0 0.0 0.6 0.76 1.36 0.76 0.8 -0.68 0.51 0.61 0.24 46
3359 3359 23S 1 2 2901   v4 G:C cWW       Strong E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.39 -0.29 0.04 0.0 40
3360 3360 23S 1 2 2901   v4 G:C cWW       Strong M 9 7 4 0.5 0.6 0.71 1.31 0.71 0.79 -0.88 -0.77 0.02 0.09 34
3361 3361 23S 1 3 2900   v4 U:A cWW       Strong T 16 20 13 0.72 0.53 0.8 1.33 0.8 0.9 -0.39 -0.44 0.01 0.24 325
3362 3362 23S 1 3 2900   v4 U:A cWW       Strong 3 11 12 6 0.52 0.58 0.85 1.44 0.85 0.88 -0.4 -0.38 0.02 0.29 247
3363 3363 23S 1 3 2900   v4 U:A cWW       Strong B 7 10 5 0.59 0.43 0.83 1.26 0.87 0.9 0.38 0.63 0.01 0.52 173
3364 3364 23S 1 3 2900   v4 U:A cWW       Strong A 4 2 1 0.33 0.83 0.94 1.77 0.69 0.69 -0.65 -0.81 0.07 0.39 33
3365 3365 23S 1 3 2900   v4 U:A cWW       Strong C 1 2 0 0.0 0.14 0.0 0.14 0.5 0.98 1.65 0.4 0.02 0.41 44
3366 3366 23S 1 3 2900   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.33 -0.29 0.05 0.0 41
3367 3367 23S 1 3 2900   v4 U:A cWW       Strong M 4 6 7 1.0 0.75 0.89 1.64 0.89 0.89 -0.52 -0.49 0.02 0.09 34
3368 3368 23S 1 4 2899   v4 U:A cWW       Strong T 30 28 18 0.62 0.78 0.87 1.65 0.87 0.89 -0.41 -0.49 0.02 0.25 325
3369 3369 23S 1 4 2899   v4 U:A cWW       Strong 3 18 19 13 0.7 0.92 0.96 1.88 0.96 0.97 -0.36 -0.37 0.02 0.31 247
3370 3370 23S 1 4 2899   v4 U:A cWW       Strong B 12 15 10 0.74 0.93 0.96 1.9 0.96 0.98 0.61 0.77 0.01 0.53 173
3371 3371 23S 1 4 2899   v4 U:A cWW       Strong A 6 4 3 0.6 0.93 0.95 1.88 0.95 0.95 -0.51 -0.81 0.15 0.51 33
3372 3372 23S 1 4 2899   v4 U:A cWW       Strong C 5 4 1 0.22 0.12 0.0 0.12 0.52 0.55 1.09 0.76 0.0 0.43 44
3373 3373 23S 1 4 2899   v4 U:A cWW       Strong E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.47 -0.35 0.05 0.0 41
3374 3374 23S 1 4 2899   v4 U:A cWW       Strong M 7 5 4 0.67 0.67 0.79 1.45 0.79 0.86 -0.78 -0.68 0.02 0.09 34
3375 3375 23S 1 5 2898   v4 A:U cWW       Strong T 20 15 9 0.51 0.8 0.97 1.76 0.97 0.98 0.18 0.27 0.02 0.26 326
3376 3376 23S 1 5 2898   v4 A:U cWW       Strong 3 10 6 3 0.38 0.89 0.98 1.87 0.98 0.99 0.26 0.3 0.03 0.32 248
3377 3377 23S 1 5 2898   v4 A:U cWW       Strong B 3 1 0 0.0 1.0 1.0 2.0 1.0 1.0 1.66 1.95 0.01 0.53 174
3378 3378 23S 1 5 2898   v4 A:U cWW       Strong A 5 5 3 0.6 0.8 0.93 1.73 0.93 0.93 -0.12 -0.33 0.02 0.66 33
3379 3379 23S 1 5 2898   v4 A:U cWW       Strong C 2 2 1 0.5 1.0 1.0 2.0 1.0 1.0 1.7 1.72 0.0 0.43 44
3380 3380 23S 1 5 2898   v4 A:U cWW       Strong E 2 0 0 0.0 0.0 0.0 0.0 0.0 1.0 -0.48 -0.49 0.06 0.0 41
3381 3381 23S 1 5 2898   v4 A:U cWW       Strong M 8 7 5 0.67 0.6 0.78 1.38 0.78 0.89 -0.8 -0.71 0.01 0.09 34
3382 3382 23S 1 6 2897   v4 A:U cWW       Strong T 16 13 11 0.76 0.8 0.96 1.76 0.96 0.97 0.26 0.22 0.02 0.26 326
3383 3383 23S 1 6 2897   v4 A:U cWW       Strong 3 7 6 3 0.46 0.87 0.98 1.85 0.98 0.98 0.36 0.28 0.03 0.32 248
3384 3384 23S 1 6 2897   v4 A:U cWW       Strong B 2 2 1 0.5 0.5 0.99 1.49 0.99 1.0 1.85 1.91 0.01 0.53 174
3385 3385 23S 1 6 2897   v4 A:U cWW       Strong A 3 4 2 0.57 0.71 0.93 1.64 0.93 0.93 0.4 0.15 0.0 0.68 33
3386 3386 23S 1 6 2897   v4 A:U cWW       Strong C 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.74 1.76 0.0 0.43 44
3387 3387 23S 1 6 2897   v4 A:U cWW       Strong E 2 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.55 -0.45 0.05 0.0 41
3388 3388 23S 1 6 2897   v4 A:U cWW       Strong M 8 6 7 1.0 0.65 0.78 1.43 0.78 0.78 -0.64 -0.47 0.01 0.09 34
3389 3389 23S 1 7 2896   v4 G:C cWW       Strong T 20 16 10 0.56 0.83 0.95 1.78 0.95 0.96 -0.02 -0.04 0.01 0.27 329
3390 3390 23S 1 7 2896   v4 G:C cWW       Strong 3 10 7 4 0.47 0.81 0.98 1.78 0.98 0.99 0.33 0.33 0.01 0.33 251
3391 3391 23S 1 7 2896   v4 G:C cWW       Strong B 5 4 4 0.89 0.88 0.99 1.87 0.99 0.99 1.64 1.66 0.01 0.54 177
3392 3392 23S 1 7 2896   v4 G:C cWW       Strong A 2 3 0 0.0 0.82 0.9 1.72 0.9 0.97 0.69 -0.01 0.07 0.73 33
3393 3393 23S 1 7 2896   v4 G:C cWW       Strong C 2 4 1 0.33 0.64 0.89 1.53 0.89 0.89 1.14 0.82 0.0 0.43 44
3394 3394 23S 1 7 2896   v4 G:C cWW       Strong E 3 0 0 0.0 0.0 0.0 0.0 0.0 0.0 -0.66 -0.45 0.03 0.0 41
3395 3395 23S 1 7 2896   v4 G:C cWW       Strong M 8 5 5 0.77 0.64 0.81 1.46 0.81 0.89 -0.78 -0.62 0.01 0.09 34
3396 3396 23S 1 8 2895   v4 C:G cWW       Weak T 31 29 7 0.23 0.57 0.73 1.3 0.73 0.92 -0.23 -0.26 0.0 0.27 329
3397 3397 23S 1 8 2895   v4 C:G cWW       Weak 3 22 21 5 0.23 0.62 0.75 1.37 0.75 0.99 -0.14 -0.16 0.01 0.33 251
3398 3398 23S 1 8 2895   v4 C:G cWW       Weak B 11 13 3 0.25 0.57 0.72 1.29 0.72 0.99 0.77 0.73 0.0 0.54 177
3399 3399 23S 1 8 2895   v4 C:G cWW       Weak A 5 8 2 0.31 0.9 0.93 1.82 0.93 0.96 0.1 -0.3 0.07 0.68 33
3400 3400 23S 1 8 2895   v4 C:G cWW       Weak C 4 4 1 0.25 0.26 0.68 0.94 0.68 0.7 0.57 1.32 0.0 0.43 44
3401 3401 23S 1 8 2895   v4 C:G cWW       Weak E 6 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.91 -0.43 0.01 0.0 41
3402 3402 23S 1 8 2895   v4 C:G cWW       Weak M 5 4 1 0.22 0.47 0.67 1.14 0.67 0.74 -0.74 -0.53 0.02 0.09 34
1 1 16S 1 9 25   v4 G:C cWW       Strong T 32 27 12 0.41 0.94 0.97 1.91 0.97 0.98 0.52 0.64 0.0 0.43 3661
2 2 16S 1 9 25   v4 G:C cWW       Strong 3 16 9 3 0.24 0.94 0.98 1.92 0.98 0.99 0.93 1.03 0.0 0.4 2878
3 3 16S 1 9 25   v4 G:C cWW       Strong B 13 7 1 0.1 0.02 0.0 0.02 0.97 0.98 1.86 1.85 0.0 0.33 1946
4 4 16S 1 9 25   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.94 2.0 0.0 0.56 148
5 5 16S 1 9 25   v4 G:C cWW       Strong C 2 0 0 0.0 0.0 0.0 0.0 0.98 0.98 1.81 2.0 0.0 0.68 123
6 6 16S 1 9 25   v4 G:C cWW       Strong E 3 2 2 0.8 0.14 0.0 0.14 0.99 0.99 1.73 1.95 0.02 0.73 784
7 7 16S 1 9 25   v4 G:C cWW       Strong M 14 18 9 0.56 0.69 0.95 1.65 0.95 0.96 1.3 1.28 0.0 0.57 662
8 8 16S 1 10 24   v4 A:U cWW       Strong T 33 22 8 0.29 0.93 0.97 1.9 0.97 0.99 0.44 0.56 0.0 0.44 3741
9 9 16S 1 10 24   v4 A:U cWW       Strong 3 20 12 5 0.31 0.92 0.97 1.89 0.97 0.99 0.76 0.96 0.0 0.41 2956
10 10 16S 1 10 24   v4 A:U cWW       Strong B 14 8 1 0.09 0.01 0.0 0.01 0.96 0.99 1.73 1.9 0.0 0.34 2016
11 11 16S 1 10 24   v4 A:U cWW       Strong A 3 2 2 0.8 0.97 0.99 1.97 0.99 1.0 1.17 1.21 0.0 0.56 147
12 12 16S 1 10 24   v4 A:U cWW       Strong C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.68 124
13 13 16S 1 10 24   v4 A:U cWW       Strong E 3 2 2 0.8 0.9 0.99 1.9 0.99 0.99 1.5 1.63 0.01 0.74 793
14 14 16S 1 10 24   v4 A:U cWW       Strong M 13 10 3 0.26 0.78 0.96 1.74 0.96 0.98 1.26 1.26 0.0 0.57 663
15 15 16S 1 11 23   v4 G:C cWW       Strong T 23 16 10 0.51 0.26 0.96 1.21 0.96 0.96 1.61 1.84 0.0 0.45 3799
16 16 16S 1 11 23   v4 G:C cWW       Strong 3 7 4 1 0.18 0.23 1.0 1.23 1.0 1.0 1.91 1.95 0.0 0.42 3010
17 17 16S 1 11 23   v4 G:C cWW       Strong B 6 4 1 0.2 0.27 0.99 1.26 0.99 0.99 1.91 1.94 0.0 0.35 2053
18 18 16S 1 11 23   v4 G:C cWW       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.57 151
19 19 16S 1 11 23   v4 G:C cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.93 2.0 0.0 0.69 125
20 20 16S 1 11 23   v4 G:C cWW       Strong E 1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.89 1.99 0.01 0.76 806
21 21 16S 1 11 23   v4 G:C cWW       Strong M 15 12 9 0.67 0.26 0.77 1.03 0.77 0.78 0.91 1.45 0.0 0.57 666
22 22 16S 1 12 22   v4 U:G cWW       Strong T 35 31 9 0.27 0.89 0.97 1.86 0.25 0.93 0.79 0.88 0.0 0.46 3888
23 23 16S 1 12 22   v4 U:G cWW       Strong 3 11 13 6 0.5 0.93 0.98 1.91 0.3 0.98 0.95 1.07 0.0 0.43 3095
24 24 16S 1 12 22   v4 U:G cWW       Strong B 6 6 1 0.17 0.08 0.0 0.08 0.01 0.99 1.88 1.91 0.0 0.36 2131
25 25 16S 1 12 22   v4 U:G cWW       Strong A 2 3 2 0.8 0.86 0.99 1.84 0.91 0.99 1.57 1.53 0.0 0.56 149
26 26 16S 1 12 22   v4 U:G cWW       Strong C 1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.93 2.0 0.0 0.69 126
27 27 16S 1 12 22   v4 U:G cWW       Strong E 3 4 3 0.86 0.11 0.0 0.11 0.95 0.95 1.63 1.91 0.0 0.77 815
28 28 16S 1 12 22   v4 U:G cWW       Strong M 23 18 3 0.15 0.75 0.91 1.66 0.07 0.69 0.97 0.99 0.0 0.57 669
3403 3403 23S 2 15 525   v4 G:U cWW       Strong T 34 52 18 0.42 0.3 0.6 0.89 0.44 0.89 0.32 0.14 0.02 0.63 671
3404 3404 23S 2 15 525   v4 G:U cWW       Strong 3 14 19 4 0.24 0.64 0.87 1.51 0.26 0.94 0.63 0.68 0.0 0.63 399
3405 3405 23S 2 15 525   v4 G:U cWW       Strong B 1 4 1 0.4 0.33 0.98 1.32 0.02 1.0 1.93 1.83 0.0 0.76 247
3406 3406 23S 2 15 525   v4 G:U cWW       Strong A 5 4 1 0.22 0.3 0.61 0.91 0.17 0.67 0.33 0.77 0.0 0.88 36
3407 3407 23S 2 15 525   v4 G:U cWW       Strong C 3 9 0 0.0 0.48 0.7 1.18 0.15 0.37 0.85 0.43 0.0 0.45 46
3408 3408 23S 2 15 525   v4 G:U cWW       Strong E 8 11 2 0.21 0.48 0.86 1.34 0.8 0.89 0.86 0.91 0.0 0.43 116
3409 3409 23S 2 15 525   v4 G:U cWW       Strong M 17 24 14 0.68 0.69 0.83 1.52 0.83 0.92 0.49 -0.03 0.05 0.69 226
3410 3410 23S 2 16 524   v4 C:G cWW       Strong T 33 53 22 0.51 0.8 0.86 1.66 0.86 0.98 -0.06 -0.17 0.01 0.63 672
3411 3411 23S 2 16 524   v4 C:G cWW       Strong 3 19 36 12 0.44 0.82 0.88 1.7 0.88 0.99 0.1 0.05 0.0 0.63 398
3412 3412 23S 2 16 524   v4 C:G cWW       Strong B 11 16 9 0.67 0.89 0.94 1.82 0.94 1.0 0.28 0.27 0.0 0.76 246
3413 3413 23S 2 16 524   v4 C:G cWW       Strong A 2 5 1 0.29 0.32 0.64 0.95 0.64 1.0 1.24 0.43 0.0 0.88 36
3414 3414 23S 2 16 524   v4 C:G cWW       Strong C 2 3 1 0.4 0.07 0.0 0.07 0.3 0.98 1.11 1.78 0.0 0.45 46
3415 3415 23S 2 16 524   v4 C:G cWW       Strong E 6 15 2 0.19 0.53 0.83 1.36 0.83 0.96 0.71 0.63 0.0 0.44 116
3416 3416 23S 2 16 524   v4 C:G cWW       Strong M 12 14 9 0.69 0.81 0.95 1.76 0.95 0.98 0.46 0.22 0.05 0.7 228
36 36 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong T 13 16 7 0.48 0.15 0.0 0.15 0.99 0.99 1.92 1.9 0.0 0.46 3912
37 37 16S 2 17 918   v4 U:A cWW   3°: pseudoknot   Strong 3 3 6 1 0.22 0.05 0.0 0.05 0.99 0.99 1.94 1.92 0.0 0.43 3123

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");