home / crw2

Base-pair collective (covariation) scores

7 rows where conformation = "cWH" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: Xch, PE, WCGU, XCons, DfDel

group_code 7

  • 3 1
  • A 1
  • B 1
  • C 1
  • E 1
  • M 1
  • T 1

strength 1

  • Strong 7

molecule 1

  • 23S 7

conformation 1

  • cWH · 7 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
3669 3669 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong T 33 37 15 0.43 0.48 0.73 1.21 0.73 0.82 -0.45 -0.59 0.0 0.52 740
3670 3670 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong 3 17 20 6 0.32 0.34 0.74 1.08 0.74 0.82 0.84 0.45 0.0 0.64 411
3671 3671 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong B 8 10 3 0.33 0.58 0.88 1.46 0.88 0.95 0.84 0.9 0.0 0.78 256
3672 3672 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong A 2 2 1 0.5 0.5 0.89 1.39 0.89 1.0 0.8 1.06 0.02 0.85 36
3673 3673 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong C 8 11 7 0.74 0.4 0.78 1.18 0.78 0.98 1.18 0.73 0.0 0.93 96
3674 3674 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong E 7 8 2 0.27 0.11 0.0 0.11 0.39 0.48 0.97 0.16 0.01 0.44 119
3675 3675 23S 6.2 67 74   v4 U:A cWH   3°: pseudoknot   Strong M 8 6 2 0.29 0.33 0.46 0.79 0.43 0.46 -0.61 -0.62 0.0 0.12 233

Advanced export

JSON shape: default, array, newline-delimited

CSV options:

CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");
Powered by Datasette · Queries took 1748.404ms