Base-pair collective (covariation) scores

14 rows where conformation = "No BP", molecule = "16S" and strength = "Strong" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, DfDel, PNuc

group_code 7

strength 1

  • Strong · 14 ✖

molecule 1

  • 16S · 14 ✖

conformation 1

  • No BP · 14 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
1296 1296 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong T 95 111 26 0.25 0.26 0.66 0.92 0.16 0.7 0.79 0.52 0.03 0.79 6988
1297 1297 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong 3 56 55 17 0.31 0.29 0.7 0.99 0.11 0.69 1.2 0.89 0.0 0.83 5946
1298 1298 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong B 54 47 17 0.34 0.5 0.84 1.34 0.14 0.82 1.11 1.08 0.0 0.8 4697
1299 1299 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong A 0 4 0 0.0 0.0 0.0 0.0 0.02 0.97 2.0 1.52 0.0 0.82 217
1300 1300 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong C 8 17 4 0.32 0.12 0.0 0.12 0.05 0.79 1.55 0.98 0.0 0.9 164
1301 1301 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong E 2 4 0 0.0 0.0 0.0 0.0 0.01 0.02 1.95 1.82 0.0 0.98 1032
1302 1302 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong M 31 39 5 0.14 0.07 0.0 0.07 0.68 0.81 -0.31 0.37 0.2 0.53 886
2521 2521 16S 34 1064 1192   v4 G:C No BP       Strong T 53 71 16 0.26 0.58 0.89 1.47 0.76 0.78 0.99 1.0 0.0 0.81 6914
2522 2522 16S 34 1064 1192   v4 G:C No BP       Strong 3 9 32 6 0.29 0.82 0.96 1.78 0.8 0.82 1.23 1.21 0.0 0.78 5606
2523 2523 16S 34 1064 1192   v4 G:C No BP       Strong B 2 24 1 0.08 0.0 0.0 0.0 0.97 0.99 1.99 1.78 0.0 0.75 4404
2524 2524 16S 34 1064 1192   v4 G:C No BP       Strong A 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.75 198
2525 2525 16S 34 1064 1192   v4 G:C No BP       Strong C 1 8 1 0.22 0.06 0.0 0.06 0.9 0.96 1.95 1.4 0.0 0.9 163
2526 2526 16S 34 1064 1192   v4 G:C No BP       Strong E 7 8 5 0.67 0.44 0.94 1.38 0.02 0.05 1.45 1.45 0.0 0.95 1000
2527 2527 16S 34 1064 1192   v4 G:C No BP       Strong M 43 31 9 0.24 0.26 0.54 0.8 0.54 0.55 0.55 0.73 0.0 0.99 1150

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");