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Base-pair collective (covariation) scores

15 rows where conformation = "No BP", group_code = "T" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

molecule 2

  • 16S 9
  • 23S 6

strength 1

  • Weak · 15 ✖

group_code 1

  • T · 15 ✖

conformation 1

  • No BP · 15 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
29 29 16S 1 13 21   v4 U:G No BP       Weak T 14 68 3 0.07 0.02 0.0 0.02 0.09 0.98 1.8 1.5 0.0 0.46 3890
911 911 16S 15 375 388   v4 U:G No BP       Weak T 10 30 4 0.2 0.05 0.0 0.05 0.01 0.99 1.94 1.68 0.02 0.8 6852
1443 1443 16S 21 606 632   v4 G:U No BP       Weak T 89 148 18 0.15 0.15 0.0 0.15 0.09 0.78 -0.06 -0.3 0.01 0.61 7251
4824 4824 23S 33 687 775   v4 C:G No BP       Weak T 11 7 0 0.0 0.29 0.97 1.27 0.97 0.98 1.72 1.8 0.0 0.84 886
4929 4929 23S 34 703 729   v4 U:G No BP       Weak T 40 4 1 0.04 0.02 0.0 0.02 0.17 0.93 0.55 1.49 0.01 0.79 887
2213 2213 16S 31 960 975   v4 U:A No BP       Weak T 10 32 1 0.05 0.39 0.77 1.16 0.77 0.99 1.35 0.64 0.0 0.81 6871
2220 2220 16S 31 961 974   v4 U:A No BP       Weak T 48 99 4 0.05 0.07 0.0 0.07 0.67 0.84 1.73 0.59 0.0 0.8 6856
2458 2458 16S 34 1053 1205   v4 G:U No BP       Weak T 7 20 0 0.0 0.01 0.0 0.01 0.18 1.0 1.35 1.79 0.0 0.81 6891
2731 2731 16S 40 1158 1178   v4 C:G No BP       Weak T 12 156 4 0.05 0.13 0.0 0.13 0.96 0.97 0.97 1.02 0.12 0.71 7138
2738 2738 16S 40 1159 1177   v4 U:G No BP       Weak T 80 167 11 0.09 0.16 0.0 0.16 0.07 0.94 0.49 1.0 0.12 0.71 7135
3277 3277 16S 45 1506 1529   v4 U:G No BP       Weak T 7 19 0 0.0 0.01 0.0 0.01 0.05 0.99 1.9 1.58 0.0 0.26 2260
7225 7225 23S 66 1799 1820   v4 G:U No BP       Weak T 3 10 1 0.15 0.01 0.0 0.01 0.24 0.99 1.63 0.93 0.0 0.78 842
7498 7498 23S 69 1911 1919   v4 U:A No BP       Weak T 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.86 0.0 0.8 852
7757 7757 23S 74 2075 2434   v4 U:A No BP       Weak T 4 8 3 0.5 0.05 0.0 0.05 0.98 0.98 1.94 1.83 0.0 0.81 845
8191 8191 23S 80 2249 2255   v4 U:G No BP       Weak T 2 10 1 0.17 0.11 0.0 0.11 0.04 0.99 1.91 1.68 0.0 0.81 845

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");
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