Base-pair collective (covariation) scores

12 rows where conformation = "No BP", group_code = "T" and strength = "Strong" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, Cov1, Cov3, C1+C3, WC, WCGU, YCons, DfDel, PNuc, Seq

molecule 2

strength 1

  • Strong · 12 ✖

group_code 1

conformation 1

  • No BP · 12 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
1296 1296 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong T 95 111 26 0.25 0.26 0.66 0.92 0.16 0.7 0.79 0.52 0.03 0.79 6988
2521 2521 16S 34 1064 1192   v4 G:C No BP       Strong T 53 71 16 0.26 0.58 0.89 1.47 0.76 0.78 0.99 1.0 0.0 0.81 6914
6434 6434 23S 55 1420 1578   v4 A:U No BP       Strong T 29 38 14 0.42 0.5 0.71 1.2 0.53 0.55 -0.83 -0.73 0.1 0.44 860
6742 6742 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong T 29 16 12 0.53 0.53 0.69 1.21 0.44 0.58 -0.71 -0.76 0.0 0.49 861
7512 7512 23S 71 1935 1962   v4 G:C No BP       Strong T 21 23 8 0.36 0.77 0.89 1.65 0.89 0.95 0.55 0.52 0.0 0.81 847
7967 7967 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong T 14 10 9 0.75 0.72 0.94 1.66 0.04 0.04 -0.13 -0.1 0.0 0.55 847
7974 7974 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong T 15 14 8 0.55 0.86 0.94 1.79 0.94 0.95 -0.3 -0.21 0.0 0.55 847
7981 7981 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong T 14 15 9 0.62 0.72 0.92 1.64 0.92 0.93 -0.37 -0.3 0.0 0.55 847
8310 8310 23S 84 2296 2322   v4 U:A No BP       Strong T 5 11 3 0.38 0.1 0.0 0.1 0.94 0.94 0.34 0.19 0.0 0.55 848
8926 8926 23S 94 2637 2781   v4 U:A No BP       Strong T 15 23 9 0.47 0.71 0.92 1.63 0.92 0.93 -0.24 -0.19 0.04 0.46 662
9241 9241 23S 98 2796 2800   v4 U:A No BP       Strong T 7 7 3 0.43 0.67 0.83 1.5 0.83 0.88 -0.39 -0.38 0.0 0.06 693
9395 9395 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong T 22 18 8 0.4 0.75 0.9 1.65 0.01 0.07 0.7 0.45 0.02 0.4 447

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");