Base-pair collective (covariation) scores

15 rows where conformation = "No BP", group_code = "M" and strength = "Weak" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: helix_number, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, DfDel, PNuc, Seq

molecule 2

strength 1

  • Weak · 15 ✖

group_code 1

conformation 1

  • No BP · 15 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
35 35 16S 1 13 21   v4 U:G No BP       Weak M 10 59 2 0.06 0.16 0.0 0.16 0.51 0.9 1.4 0.89 0.0 0.57 669
917 917 16S 15 375 388   v4 U:G No BP       Weak M 7 8 3 0.4 0.09 0.0 0.09 0.06 0.99 1.82 0.84 0.11 0.71 829
1449 1449 16S 21 606 632   v4 G:U No BP       Weak M 7 5 1 0.17 0.01 0.0 0.01 0.01 0.03 -0.25 -0.23 0.0 0.0 1021
4830 4830 23S 33 687 775   v4 C:G No BP       Weak M 8 4 0 0.0 0.4 0.94 1.34 0.94 0.98 1.34 1.62 0.01 0.83 262
4935 4935 23S 34 703 729   v4 U:G No BP       Weak M 20 4 1 0.08 0.04 0.0 0.04 0.09 0.73 -0.3 0.73 0.04 0.64 263
2219 2219 16S 31 960 975   v4 U:A No BP       Weak M 9 16 1 0.08 0.61 0.96 1.56 0.96 0.96 1.53 1.43 0.0 0.99 1153
2226 2226 16S 31 961 974   v4 U:A No BP       Weak M 43 61 4 0.08 0.28 0.67 0.96 0.56 0.56 1.14 0.69 0.0 0.99 1151
2464 2464 16S 34 1053 1205   v4 G:U No BP       Weak M 5 6 0 0.0 0.06 0.0 0.06 0.92 0.99 1.55 1.9 0.0 0.99 1152
2737 2737 16S 40 1158 1178   v4 C:G No BP       Weak M 5 145 3 0.04 0.03 0.0 0.03 0.05 0.05 -0.32 0.02 0.0 0.0 1152
2744 2744 16S 40 1159 1177   v4 U:G No BP       Weak M 8 148 4 0.05 0.02 0.0 0.02 0.01 0.03 -0.32 0.0 0.0 0.0 1152
3283 3283 16S 45 1506 1529   v4 U:G No BP       Weak M 1 10 0 0.0 0.0 0.0 0.0 0.16 0.99 1.99 1.27 0.0 0.58 672
7231 7231 23S 66 1799 1820   v4 G:U No BP       Weak M 3 3 1 0.33 0.12 0.0 0.12 0.03 1.0 1.27 1.37 0.0 0.83 283
7504 7504 23S 69 1911 1919   v4 U:A No BP       Weak M 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.71 1.71 0.0 0.96 311
7763 7763 23S 74 2075 2434   v4 U:A No BP       Weak M 4 7 3 0.55 0.06 0.0 0.06 0.95 0.96 1.85 1.67 0.0 0.99 309
8197 8197 23S 80 2249 2255   v4 U:G No BP       Weak M 1 8 1 0.22 0.12 0.0 0.12 0.11 0.98 1.88 1.4 0.0 0.99 309

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");